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{bio}[foss/2019a] VEP v96.0 #8733

Merged
merged 3 commits into from
Oct 14, 2019
Merged

{bio}[foss/2019a] VEP v96.0 #8733

merged 3 commits into from
Oct 14, 2019

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lexming
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@lexming lexming commented Aug 11, 2019

(created using eb --new-pr)
Update of VEP to version 96.0. Main difference with previous builds is the addition of ensembl-xs, which provides pre-compiled replacements for frequently used routines in VEP.

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lexming commented Aug 11, 2019

Test report by @lexming
SUCCESS
Build succeeded for 3 out of 3 (1 easyconfigs in this PR)
login2.cerberus.os - Linux centos linux 7.6.1810, Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz, Python 2.7.5
See https://gist.github.com/4ab8119a7d04ce29e851f5998d4e2a35 for a full test report.

@boegel boegel added the update label Aug 12, 2019
@boegel boegel added this to the 3.x milestone Aug 12, 2019
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lexming commented Aug 13, 2019

Test report by @lexming
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in this PR)
login2.cerberus.os - Linux centos linux 7.6.1810, Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz, Python 2.7.5
See https://gist.github.com/3aaa44abbb2b017e6e7f90ee7d794cd7 for a full test report.

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VEP-96.0: add Bio::EnsEMBL::XS to default easyconfig and rely on vep …
e49dbc9 
…easyblock to handle sanity checks and set environment variables
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lexming commented Oct 14, 2019

This PR now depends on easybuilders/easybuild-easyblocks#1828

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boegel commented Oct 14, 2019

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node3119.skitty.os - Linux centos linux 7.6.1810, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/2e7d75f9a88c1221c2d277c9a8d7adc3 for a full test report.

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boegel commented Oct 14, 2019

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
generoso - Linux centos linux 7.6.1810, Intel(R) Xeon(R) CPU E5-2660 v4 @ 2.00GHz, Python 3.6.8
See https://gist.github.com/91a311279128c2b8048812828bbadf76 for a full test report.

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boegel commented Oct 14, 2019

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in this PR)
node2632.swalot.os - Linux centos linux 7.6.1810, Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz, Python 2.7.5
See https://gist.github.com/c3095ea8dd4161fd14872cc1ce504bb8 for a full test report.

@boegel boegel mentioned this pull request Oct 14, 2019
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@boegel boegel modified the milestones: 3.x, 4.0.1 Oct 14, 2019
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boegel commented Oct 14, 2019

Going in, thanks @lexming!

@boegel boegel merged commit 6589acd into easybuilders:develop Oct 14, 2019
@lexming lexming deleted the 20190811025715_new_pr_VEP960 branch October 15, 2019 09:40
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