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release EasyBuild v4.0.1 #9136

Merged
merged 652 commits into from
Oct 17, 2019
Merged

release EasyBuild v4.0.1 #9136

merged 652 commits into from
Oct 17, 2019

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boegel
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@boegel boegel commented Oct 15, 2019

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rokzitko and others added 30 commits October 2, 2019 06:33
@rokzitko
removed blank line
8900fc7
@migueldiascosta
Merge pull request #9049 from boegel/20191001193937_new_pr_Gaia245
77bac99 
{lib}[GCCcore/8.2.0] Gaia v2.4.5 w/ Python 2.7.15
@boegel
adding easyconfigs: Essentia-2.1_beta5-foss-2019a-Python-2.7.15.eb an…
3b86e53 
…d patches: Essentia-2.1_beta5_fix-FFmpeg-libswresample.patch, Essentia-2.1_beta5_fix-test-PYTHONPATH.patch, Essentia-2.1_beta5_fix-vamp-prefix.patch
@furstj
CGAL updated to 4.14.1
c720b63
fix local variables
00d03c3
Fixes https url
80800c6
update source_url for MKmisc
dd066de
Fix https check
080830e
Change to fastructure eaysblock
8acc06d
Add description,author to patch and remove newline
3e47c8a
Fix local variables
16b7cf4
@migueldiascosta
Merge pull request #8773 from boegel/20190814220457_new_pr_MetaboAnal…
b1cb48a 
…ystR200

{bio}[foss/2019a] MetaboAnalystR v2.0.1-20190827 w/ R 3.6.0
Fix matplotlib verison
049d590
Fix issues
1f6d79a
Remove redundant issues and add description to patch
9107261
@boegel
Merge pull request #8998 from smoors/20190925123945_new_pr_RepeatMask…
71f64d3 
…er409p2

{bio}[gompi/2019b] RepeatMasker v4.0.9-p2
@boegel
also include gompi as build dep in libsamplerate easyconfig to ensure…
56aab78 
… FFTW can be loaded when using HMNS
@boegel
fix gomp build dep in libsamplerate easyconfig
c2e9eea
Fix patch checksum
ad1678f
@akesandgren
UCX: Use https instead of http for homepage URL
e02e41d
fix local variable
87afb37
@boegel
Merge pull request #9044 from furstj/20191001153800_new_pr_CGAL414
591b933 
{math,numlib}[GCCcore/8.3.0,foss/2019b] CGAL v4.14.1, MPFR v4.0.2 w/ Python 3.7.4
@SethosII
adding easyconfigs: AdapterRemoval-2.3.1-foss-2018b.eb
29ad930
@SethosII
adding easyconfigs: StringTie-2.0.3-GCCcore-7.3.0.eb
fd16a32
@branfosj
merging in develop
45077d4
@branfosj
trying to sort out ci failure
54a3a32
@branfosj
remember to also update NCO
2fd07f5
@fizwit
fix source url
c446e4f
@fizwit
fix source url
17de639
@boegel
adding easyconfigs: Spack-0.12.1.eb
9fac9cb
akesandgren and others added 25 commits October 12, 2019 21:19
@akesandgren
Theano, PyTorch: Use https in URLs
94c3983
@boegel
Merge pull request #9112 from akesandgren/pytorch_fix_cudnn_version_f…
f7b2972 
…or_2019a_toolchain

PyTorch, TensorFlow, Theano: Use a cuDNN version that has support for the CUDA version in fosscuda/2019a (CUDA 10.1)
@smoors
Merge pull request #9111 from boegel/TurboVNC_fix
cbac84f 
avoid that TurboVNC picks up system X11 libraries + add missing Mesa/libglvnd deps
@lexming
VEP-96.0: add Bio::EnsEMBL::XS to default easyconfig and rely on vep …
e49dbc9 
…easyblock to handle sanity checks and set environment variables
@Darkless012
Enabled SQLITE_ENABLE_COLUMN_METADATA, which is needed for GDAL (and …
842d01b 
…QGIS)
@Darkless012
adding easyconfigs: QtKeychain-0.9.1-GCCcore-8.2.0.eb
0bcd3ae
@boegel
use https in homepage/source_urls in recent SQLite easyconfigs
4ba1fca
@boegel
also use easybuild/easyconfigs/s/SQLite in SQLite 3.29.0 easyconfig
2140aaa
@boegel
Merge pull request #9119 from Darkless012/20191014123144_new_pr_QtKey…
4dabd72 
…chain091

{tools}[GCCcore/8.2.0] QtKeychain v0.9.1
@Darkless012
adding easyconfigs: Qt5Webkit-5.212.0-alpha3-GCCcore-8.2.0.eb
cc58380
@Darkless012
adding easyconfigs: QGIS-3.4.12-foss-2019a-Python-3.7.2.eb and patche…
068107d 
…s: QGIS-3.4.12_fix-SIP-macro.patch
@boegel
add missing checksum in Qt5WebKit easyconfig file
0275fa7
@boegel
Merge pull request #9118 from Darkless012/20191014123019_new_pr_SQLit…
d7703c7 
…e3272

Enabled SQLITE_ENABLE_COLUMN_METADATA, which is needed for GDAL (and QGIS)
@Micket
Merge pull request #9005 from boegel/20190925200108_new_pr_libspatial…
9ad0878 
…ite430a

{lib}[foss/2019a] libspatialite v4.3.0a, FreeXL v1.0.5
@branfosj
savvy and shrinkwrap
eded635
@branfosj
typo in download location
f16baf2
@branfosj
typo in download location
f0dfd65
@boegel
Merge pull request #9120 from Darkless012/20191014143609_new_pr_Qt5We…
deeb195 
…bkit52120alpha3

{devel}[GCCcore/8.2.0] Qt5Webkit v5.212.0-alpha3
@boegel
Merge pull request #9121 from Darkless012/20191014143651_new_pr_QGIS3412
48ec51e 
{geo}[foss/2019a] QGIS v3.4.12 w/ Python 3.7.2
@boegel
Merge pull request #8733 from lexming/20190811025715_new_pr_VEP960
6589acd 
{bio}[foss/2019a] VEP v96.0
@boegel
Merge pull request #9124 from branfosj/savvy
3119bea 
{data}[GCC/8.2.0-2.31.1] savvy v1.3.0 + shrinkwrap v1.0.0-beta
@migueldiascosta
prepare release notes for eb401
8b661f5
@boegel
Merge pull request #55 from migueldiascosta/eb401
4f556c8 
prepare release notes for eb401
@boegel
tweak release notes and bump version for v4.0.1 release
a3d4e4d
@boegel
Merge pull request #9135 from boegel/eb401
a73d500 
update release notes and bump version for v4.0.1 release
@boegel boegel added the update label Oct 15, 2019
@boegel boegel added this to the 4.0.1 milestone Oct 15, 2019
@easybuilders easybuilders deleted a comment from boegelbot Oct 17, 2019
@boegel boegel merged commit 3b83714 into master Oct 17, 2019
@boegel boegel deleted the 4.0.x branch April 12, 2020 19:06
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