prepare CRAN submission

[strengejacke]

No description provided.

[strengejacke]

R devel test results:

 ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-clmm.R:181:5'): get_variance ─────────────────────────────────
  get_variance(m2) (`actual`) not equal to list(...) (`expected`).
  
  `actual` is length 5
  `expected` is length 6
  
      names(actual)      | names(expected)       
  [1] "var.fixed"        | "var.fixed"        [1]
                         - "var.random"       [2]
  [2] "var.residual"     | "var.residual"     [3]
  [3] "var.distribution" | "var.distribution" [4]
  [4] "var.dispersion"   | "var.dispersion"   [5]
  
    `actual$var.fixed`: 0.11
  `expected$var.fixed`: 0.13
  
    `actual$var.intercept`: 0.00 0.00
  `expected$var.intercept`: 0.15 0.04
  
  `actual$var.random` is absent
  `expected$var.random` is a double vector (0.193186321588604)
  ── Failure ('test-is_converged.R:35:3'): is_converged, glmmTMB ─────────────────
  is_converged(model) is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  ── Failure ('test-glmmTMB.R:72:3'): get_deviance + logLik ──────────────────────
  get_deviance(m2) (`actual`) not equal to 1697.449311 (`expected`).
  
    `actual`: 1717
  `expected`: 1697
  ── Failure ('test-glmmTMB.R:756:3'): get_predicted with new levels ─────────────
  as.vector(pr) (`actual`) not equal to c(0.252, 0.39207, 0.21119, 2.20128, 2.39424, 2.28901) (`expected`).
  
    `actual`: 0.255 0.526 0.150 2.180 2.393 2.279
  `expected`: 0.252 0.392 0.211 2.201 2.394 2.289
  
  [ FAIL 4 | WARN 16 | SKIP 35 | PASS 3165 ]
  Error: Test failures
  In addition: Warning message:
  In checkMatrixPackageVersion() : Package version inconsistency detected.
  TMB was built with Matrix version 1.5.4
  Current Matrix version is 1.5.5
  Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [18s] OK
* checking HTML version of manual ... [17s] OK
* DONE
Status: 1 ERROR

[codecov-commenter]

Codecov Report

Merging #775 (91c4726) into main (24281e2) will decrease coverage by 0.02%.
The diff coverage is 45.45%.

❗ Current head 91c4726 differs from pull request most recent head 61a502a. Consider uploading reports for the commit 61a502a to get more accurate results

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@@            Coverage Diff             @@
##             main     #775      +/-   ##
==========================================
- Coverage   54.29%   54.28%   -0.02%     
==========================================
  Files         124      124              
  Lines       15214    15219       +5     
==========================================
  Hits         8261     8261              
- Misses       6953     6958       +5     

Impacted Files	Coverage Δ
R/model_info.R	55.46% <33.33%> (-0.53%)	⬇️
R/get_deviance.R	84.00% <100.00%> (+1.85%)	⬆️
R/get_loglikelihood.R	65.15% <100.00%> (ø)