The respository holds documentation associated with a project to develop resuable components for building tertiary (post-quantification) workflows for single-cell RNA-seq data.
Please visit https://tertiary-workflows-docs.readthedocs.io/ to view the documentation or view individual coding projects:
- workflowscriptscommon - Common functions for re-use over R package wrappers
- r-seurat-scripts <https://github.com/ebi-gene-expression-group/r-seurat-scripts>- Wrapper scripts around Seurat R functions
- bioconductor-singlecellexperiment-scripts <https://github.com/ebi-gene-expression-group/bioconductor-singlecellexperiment-scripts> - Wrapper scripts around SingleCellExperiment R functions
- bioconductor-scater-scripts <https://github.com/ebi-gene-expression-group/bioconductor-singlecellexperiment-scripts> - Wrapper scripts around SingleCellExperiment R functions
- container-galaxy-sc-tertiary <https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary> - Galaxy container for single cell RNA-Seq tertiary analysis tools