Enable observables in plotting.plot_number_observer #77
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kozo2
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May 2, 2020
* Interface (#74) * Add prelude #63 * Make a step plot * Add a new interface, Session * Check dimensionality * #19 Support a new keyword, proceed * #19 Enable to extend reserved keywords * Implement ensemble * session.Result is picklable * Use run_ensemble * Move ecell4.util.viz -> ecell4.plotting * ecell4.util.viz will be deprecated * get_range_of_world and get_range_of_trajectories are moved into _core * Copy deep * Add plotting._plotly * Add a datasource for STRING * Add idmapping using UniProt * Interface2 (#75) * Set method * Add more options * Fix silly mistakes * #11 Enable rich display * Session.run accepts numpy.ndarray as t * Arithmetic representations in y * Enable to set own observable in _plotly * Split elegans-based plot functions into _elegans * Format before assignment * Rename plotting.default -> BACKEND * Enable rule-based descriptions in observables * Enable observables in plotting.plot_number_observer (#77) * Session.run accepts numpy.ndarray as t * Arithmetic representations in y * Enable to set own observable in _plotly * Split elegans-based plot functions into _elegans * Format before assignment * Rename plotting.default -> BACKEND * Enable rule-based descriptions in observables * Load submodules * Skip some submodules * Remove a duplicated file * Remove all * Update version * Import all from submodules * Set __all__ * Rather use the common name * Update the relative module path * Move display_anim into _core * Enable ndiv * Fix for pi * Enable to change figsize in _matplotlib * Add DOI * Add citation * Update the citation outputs * Import citation in prelude * Put a space after a comma * load_world is already imported * Cast to an integer * Enable to fetch an abstract * Remove an unnecessary module * Simplify run_simulation and ensemble_simulations, and deprecate old implementations * The config yaml is loaded if existing * Add plot_trajectory in _plotly * Change the default renderer on Google Colab * Try STL visualization in Plotly * Set opacity * Use default colorscale * Update * Enable to show stl * Enable to check dimensionality of units in a model
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