[#934] fix removed folding annotations on document change

The method
ProjectionAnnotationModel.modifyAnnotations(Annotation[],
Map<? extends Annotation, ? extends Position>, Annotation[]) does not
consider Position changes in any cases. On large annotations the
positions won't get updated properly which leads to removed folding
annotations.

org.eclipse.lsp4e/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: Language Server Protocol client for Eclipse IDE (Incubation)
 Bundle-SymbolicName: org.eclipse.lsp4e;singleton:=true
-Bundle-Version: 0.18.5.qualifier
+Bundle-Version: 0.18.6.qualifier
 Bundle-RequiredExecutionEnvironment: JavaSE-17
 Require-Bundle: org.eclipse.core.runtime;bundle-version="3.12.0",
  org.eclipse.equinox.common;bundle-version="3.8.0",

org.eclipse.lsp4e/pom.xml

@@ -7,7 +7,7 @@
 	</parent>
 	<artifactId>org.eclipse.lsp4e</artifactId>
 	<packaging>eclipse-plugin</packaging>
-	<version>0.18.5-SNAPSHOT</version>
+	<version>0.18.6-SNAPSHOT</version>
 
 	<build>
 		<plugins>

org.eclipse.lsp4e/src/org/eclipse/lsp4e/operations/folding/LSPFoldingReconcilingStrategy.java

@@ -141,7 +141,7 @@ public void reconcile(IRegion subRegion) {
 	private void applyFolding(List<FoldingRange> ranges) {
 		// these are what are passed off to the annotation model to
 		// actually create and maintain the annotations
-		final var modifications = new ArrayList<Annotation>();
+		final var modifications = new ArrayList<Annotation>(); // not used anymore, can be removed later with the deprecated updateAnnotations method
 		final var deletions = new ArrayList<FoldingAnnotation>();
 		final var existing = new ArrayList<FoldingAnnotation>();
 		final var additions = new HashMap<Annotation, Position>();
@@ -255,13 +255,10 @@ private void updateAnnotation(List<Annotation> modifications, List<FoldingAnnota
 	 * @param newPos
 	 *            the new position that caused the annotations need for updating and
 	 *            null otherwise.
-	 * @param modifications
-	 *            the list of annotations to be modified
 	 * @param deletions
 	 *            the list of annotations to be deleted
 	 */
-	protected void updateAnnotations(Annotation existingAnnotation, Position newPos, List<Annotation> modifications,
-			List<FoldingAnnotation> deletions) {
+	protected void updateAnnotations(Annotation existingAnnotation, Position newPos, List<FoldingAnnotation> deletions) {
 		if (existingAnnotation instanceof FoldingAnnotation foldingAnnotation) {
 			// if a new position can be calculated then update the position of
 			// the annotation,
@@ -271,16 +268,35 @@ protected void updateAnnotations(Annotation existingAnnotation, Position newPos,
 				Position oldPos = theProjectionAnnotationModel.getPosition(foldingAnnotation);
 				// only update the position if we have to
 				if (!newPos.equals(oldPos)) {
-					oldPos.setOffset(newPos.offset);
-					oldPos.setLength(newPos.length);
-					modifications.add(foldingAnnotation);
+					theProjectionAnnotationModel.modifyAnnotationPosition(foldingAnnotation, newPos);
 				}
 			} else {
 				deletions.add(foldingAnnotation);
 			}
 		}
 	}
 
+	/**
+	 * Update annotations.
+	 *
+	 * @param existingAnnotation
+	 *            the existing annotations that need to be updated based on the
+	 *            given dirtied IndexRegion
+	 * @param newPos
+	 *            the new position that caused the annotations need for updating and
+	 *            null otherwise.
+	 * @param modifications
+	 *            the list of annotations to be modified - not used anymore, that's why this method is deprecated.
+	 * @param deletions
+	 *            the list of annotations to be deleted
+	 * @deprecated use {@link LSPFoldingReconcilingStrategy#updateAnnotations(Annotation, Position, List)}
+	 */
+	@Deprecated(since = "0.18.6", forRemoval = true)
+	protected void updateAnnotations(Annotation existingAnnotation, Position newPos, List<Annotation> modifications,
+			List<FoldingAnnotation> deletions) {
+		updateAnnotations(existingAnnotation, newPos, deletions);
+	}
+
 	/**
 	 * <p>
 	 * Searches the given {@link DirtyRegion} for annotations that now have a length