This repository contains code and analysis for EcoHealth Alliance's Africa Sustainable Livestock 2050 project in collaboration with FAO, specifically for work related to Avian Influenza
This repository is setup as an R package that implements the core model, which is based on Hosseini et al.'s 2013 metapopulation model [1]. The vignettes/ directory contains interim notes and analyses. References for this project can be found in this Paperpile folder
In order to install this package you need to install and use the development version of devtools:
devtools::install_github("hadley/devtools@1.13.0")
This will allow you to install private packages from github without throwing an error:
devtools::install_github("ecohealthalliance/metaflu")
Hosseini, P. R., T. Fuller, R. Harrigan, D. Zhao, C. S. Arriola, A. Gonzalez, M. J. Miller, X. Xiao, T. B. Smith, J. H. Jones, and P. Daszak. 2013. Metapopulation Dynamics Enable Persistence of Influenza A, Including A/H5N1, in Poultry. PLoS ONE 8:e80091.