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post-processing for #10 adding clustermq
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eddelbuettel committed Aug 29, 2017
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10 changes: 5 additions & 5 deletions HighPerformanceComputing.ctv
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<name>HighPerformanceComputing</name>
<topic>High-Performance and Parallel Computing with R</topic>
<maintainer email="Dirk.Eddelbuettel@R-project.org">Dirk Eddelbuettel</maintainer>
<version>2017-08-15</version>
<version>2017-08-29</version>

<info>
<p>
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as inputs. It supports LSF, SGE, Torque and SLURM.
</li>
<li>
The <pkg>clustermq</pkg> package lets you send function calls
as jobs on LSF, SGE and SLURM in a single line of code &amp; without
using network-mounted storage. It also supports transparent use of
remote clusters via SSH.
The <pkg>clustermq</pkg> package sends function calls as jobs on LSF,
SGE and SLURM via a single line of code without using network-mounted
storage. It also supports use of remote clusters via SSH.
</li>
</ul>

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<pkg>bigmemory</pkg>
<pkg>bnlearn</pkg>
<pkg>caret</pkg>
<pkg>clustermq</pkg>
<pkg>cudaBayesreg</pkg>
<pkg>data.table</pkg>
<pkg>dclone</pkg>
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4 changes: 3 additions & 1 deletion README.md
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|-----------------|------------------------------------------------------------
| **Maintainer:** | Dirk Eddelbuettel
| **Contact:** | Dirk.Eddelbuettel at R-project.org
| **Version:** | 2017-08-15
| **Version:** | 2017-08-29
| **URL:** | <https://CRAN.R-project.org/view=HighPerformanceComputing>

This CRAN task view contains a list of packages, grouped by topic, that are useful for high-performance computing (HPC) with R. In this context, we are defining 'high-performance computing' rather loosely as just about anything related to pushing R a little further: using compiled code, parallel computing (in both explicit and implicit modes), working with large objects as well as profiling.
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- The [batch](https://cran.r-project.org/package=batch) package by Hoffmann can launch parallel computing requests onto a cluster and gather results.
- The [BatchJobs](https://cran.r-project.org/package=BatchJobs/index.html) package provides Map, Reduce and Filter variants to manage R jobs and their results on batch computing systems like PBS/Torque, LSF and Sun Grid Engine. Multicore and SSH systems are also supported. The [BatchExperiments](../packages/BatchExperiments/index.html) package extends it with an abstraction layer for running statistical experiments. Package [batchtools](../packages/batchtools) is a successor / extension to both.
- The [flowr](https://cran.r-project.org/package=flowr) package offers a scatter-gather approach to submit jobs lists (including dependencies) to the computing cluster via simple data.frames as inputs. It supports LSF, SGE, Torque and SLURM.
- The [clustermq](https://cran.r-project.org/package=clustermq) package sends function calls as jobs on LSF, SGE and SLURM via a single line of code without using network-mounted storage. It also supports use of remote clusters via SSH.

**Parallel computing: Applications**

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- [bigmemory](https://cran.r-project.org/package=bigmemory)
- [bnlearn](https://cran.r-project.org/package=bnlearn)
- [caret](https://cran.r-project.org/package=caret)
- [clustermq](https://cran.r-project.org/package=clustermq)
- [cudaBayesreg](https://cran.r-project.org/package=cudaBayesreg)
- [data.table](https://cran.r-project.org/package=data.table)
- [dclone](https://cran.r-project.org/package=dclone)
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