CBEM

Code to fit spike trains with the Conductance-based encoding model.

This MATLAB code is a reference implementation for the analyses found in Latimer et al. 2014.

This code is associated with the paper from Latimer et al., "Inferring synaptic inputs from spikes with a conductance-based neural encoding model". eLife, 2019. http://dx.doi.org/10.7554/eLife.47012

Downloading the repository

• From command line:

  git clone git@github.com:pillowlab/CBEM.git

• In browser: click to Download ZIP and then unzip archive

Example Script

Open exampleScript.m to see it in action using a small simulated dataset

Reference

• K. W. Latimer, E. J. Chichilnisky, F. Rieke, & J. W. Pillow (2014). Inferring synaptic conductances from spike trains with a biophysically inspired point process model Advances in Neural Information Processings Systems 27, 954-962.