This code is associated with the paper from Aughey et al., "CATaDa reveals global remodelling of chromatin accessibility during stem cell differentiation in vivo". eLife, 2018. http://dx.doi.org/10.7554/eLife.32341
Monte Carlo simulation for comparing genomic peak files
Notes:
Simple Perl script for comparing peak files from Drosophila genomic data.
Requires .gff file inputs (with the format for chromosomes including "chr" eg. chr2L).
You will need to change the input and output paths in the script.