This code is associated with the paper from Sales et al., "Regulation of subcellular dendritic synapse specificity by axon guidance cues". eLife, 2019. http://dx.doi.org/10.7554/eLife.43478
Regulation of subcellular dendritic synapse specificity by axon guidance cues Emily C. Sales, Emily L. Heckman, Timothy L. Warren, and Chris Q. Doe
Repository consists of
(1) Python scripts written by Timothy Warren, timlwarren AT gmail (2) R script PairwiseWilcoxTest.R written by Emily Sales and Heckman (3) MATLAB Code written by Brandon Mark supplemental_matlab_code.txt
Python scripts are to analyze data collected in Slidebook. Workflow is to (1) Read in raw data from tif files and manually select ROIs. make_roi.py This saves a .pck file with data associated from the experiment.
(2) Make plots of data for different ROIs misc_py_files/just_plotting.py
(3) Example traces from Paper in misc_py_files/plot_example_traces_unc5_animal3.py misc_py_files/plot_example_traces_wt_animal1.py
(4) Summary data in summary_py_files/summary_plot_unc5.py sumarray_py_files/summary_plot.py