elifetools 0.40.0

Modified: parseJATS.funding_awards_json(), will includeawardDoi in the award data if a funding award ID type is DOI

Code merged in PR #438

elifetools 0.39.0

Many lazy functions added which use yield instead of collecting all data before return a value. Changes should be backwards compatible, except rawJATS.list() was renamed to rawJATS.get_list()

Due to the many modified functions, only the newly added functions are listed here:

Modified / Renamed: rawJATS.list() to rawJATS.get_list()

Added: rawJATS.lazy_abstract()
Added: rawJATS.lazy_article_id()
Added: rawJATS.lazy_pub_date()
Added: rawJATS.lazy_date()
Added: rawJATS.lazy_keyword_group()
Added: rawJATS.lazy_conflict()
Added: rawJATS.lazy_permissions()
Added: rawJATS.lazy_licence()
Added: rawJATS.lazy_subject_area()
Added: rawJATS.lazy_custom_meta()
Added: rawJATS.lazy_sub_display_channel()
Added: rawJATS.lazy_mixed_citations()
Added: rawJATS.lazy_object_id()
Added: rawJATS.lazy_pub_history()
Added: rawJATS.lazy_fn_group()
Added: rawJATS.lazy_media()
Added: rawJATS.lazy_inline_graphic()
Added: rawJATS.lazy_graphic()
Added: rawJATS.lazy_self_uri()
Added: rawJATS.lazy_supplementary_material()
Added: rawJATS.lazy_contrib_id()
Added: rawJATS.lazy_phone()
Added: rawJATS.lazy_bio()
Added: rawJATS.lazy_volume()
Added: rawJATS.lazy_issue()
Added: rawJATS.lazy_elocation_id()
Added: rawJATS.lazy_fpage()
Added: rawJATS.lazy_lpage()
Added: rawJATS.lazy_collab()
Added: rawJATS.lazy_publisher_loc()
Added: rawJATS.lazy_publisher_name()
Added: rawJATS.lazy_comment()
Added: rawJATS.lazy_element_citation()
Added: rawJATS.lazy_etal()
lAdded: rawJATS.azy_pub_id()
Added: rawJATS.lazy_source()
Added: rawJATS.lazy_surname()
Added: rawJATS.lazy_given_names()
Added: rawJATS.lazy_suffix()
Added: rawJATS.lazy_ext_link()
Added: rawJATS.lazy_uri()
Added: rawJATS.lazy_edition()
Added: rawJATS.lazy_version()
Added: rawJATS.lazy_chapter_title()
Added: rawJATS.lazy_data_title()
Added: rawJATS.lazy_conf_name()
Added: rawJATS.lazy_date_in_citation()
Added: rawJATS.lazy_patent()
Added: rawJATS.lazy_app_group()
Added: rawJATS.lazy_section()
Added: rawJATS.lazy_paragraph()
Added: rawJATS.lazy_math()
Added: rawJATS.lazy_boxed_text()
Added: rawJATS.lazy_funding_group()
Added: rawJATS.lazy_string_name()

Added: parseJATS.lazy_full_custom_meta()
Added: parseJATS.lazy_abstracts()
Added: parseJATS.lazy_contrib_inline_aff()
Added: parseJATS.lazy_full_award_group_funding_source()
Added: parseJATS.lazy_award_group_award_id()
Added: parseJATS.lazy_body_blocks()

Added: utils.peek()
Added: utils.lazy_paragraphs()
Added: utils.lazy_remove_doi_paragraph()
Added: utils.lazy_extract_nodes()
Added: utils.lazy_extract_previous_nodes()
Added: utils.lazy_extract_previous_siblings()

Code merged in PR #435

elifetools 0.38.0

Modified: parseJATS.body_blocks() to find tags in a potentially faster way
Modified: utils.component_acting_parent_tag() potentially find tags in a faster way
Added: utils.extract_previous_nodes() to find tags in soup.previous_elements
Added: utils.extract_previous_nodes() to find tags in soup.previous_siblings
Modified: utils.first_parent() refactored the lambda to a list comprehension
Modified: utils.tag_ordinal() to use extract_previous_nodes()
Modified: utils.tag_fig_ordinal() to use extract_previous_nodes() and refactored the lambda to a list comprehension
Modified: utils.tag_sibling_ordinal() to use extract_previous_siblings()
Modified: utils.tag_media_sibling_ordinal() to use the new functions
Modified: utils.tag_supplementary_material_sibling_ordinal() to use the new functions

Code merged in PR #433

elifetools 0.37.1

Modified: parseJATS.body_block_content() bug fix in case label_value is None when evaluating media as an animation

Code merged in PR #431

elifetools 0.37.0

Modified: parseJATS.body_block_content(), for media blocks, if animation is found in the label text then set loop to True, and autoplay to True, and continue to set these for .gif files for backwards compatibility

Code merged in PR #429

elifetools 0.36.0

Modified: parseJATS.contrib_xref() to use extract_nodes()
Modified: parseJATS.format_contrib_refs(), modified argument corresp_id_map contains data to use instead of querying the soup
Modified: parseJATS.format_contributor(), last three arguments changed (corresp_id_map, fn_id_map, and aff_id_map) to be maps of the tag id to tag object, instead of previously it accepted simple lists of tags
Modified: parseJATS.authors_non_byline(), linting only
Modified: parseJATS.format_authors(), creates the data maps to supply to format_contributor()
Modified: parseJATS.format_aff() to use the new extract_first_node() function
Modified: rawJATS.py to use the new extract_first_node() function
Added: utils.extract_first_node(), return the first node of name nodename and optionally matching an attribute value
Modified: utils.first_node_str_contents() to use the new extract_first_node() function

The changes should be fairly backwards compatible except for the argument changes to format_contrib_refs() and format_contributor()

Code merged in PR #427

elifetools 0.35.0

Modified: utils.extract_nodes() to use .descendants instead of find_all()

Code merged in PR #425

elifetools 0.34.0

Added: parseJATS.format_author_non_byline_groups(), format the author group details for non-byline authors
Added: parseJATS.author_group_author_key(), generate an author group key
Modified: parseJATS.authors_non_byline() to potentially populate only the contributor data more efficiently
Modified: parseJATS.format_authors() to use the new functions when setting group author key values

The test cases are passing and these changes are expected to be backwards compatible for known XML.

Code merged in PR #423

elifetools 0.33.1

Modified: parseJATS.format_contrib_refs(), when formatting data for a corresponding author, only parse the phone or email if the parent corresp_tag can be found by its @id attribute

Code merged in PR #421

elifetools 0.33.0

Added: parseJATS.award_group_award_id_tags() to refactor existing functions finding <award-id> tags
Modified: parseJATS.full_award_groups(), includes award-id-type value in its output
Modified: parseJATS.award_group_award_id(), uses the new function parseJATS.award_group_award_id_tags() to find <award-id> tags

No breaking changes.

Code merged in PR #419