update to version 1.0.0

elissasoroj · Mar 19, 2024 · e146a07 · e146a07
1 parent a6e7a2f
commit e146a07
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Showing 3 changed files with 6 additions and 14 deletions.
diff --git a/mkdocs.yml b/mkdocs.yml
@@ -47,7 +47,7 @@ theme:
         icon: material/weather-sunny
         name: Switch to light mode
   font:
-    #text: Quicksand
+    text: Roboto
   icon:
     logo: octicons/codespaces-24
     admonition:
@@ -97,7 +97,7 @@ markdown_extensions:
   - pymdownx.caret
   - pymdownx.details
   - pymdownx.emoji:
-      emoji_index: !!python/name:materialx.emoji.twemoji
+      emoji_index: !!python/name:material.extensions.emoji.twemoji
       emoji_generator: !!python/name:materialx.emoji.to_svg
   - pymdownx.highlight
   - pymdownx.inlinehilite

diff --git a/setup.py b/setup.py
@@ -33,18 +33,10 @@
     author_email="ess2239@columbia.edu",
     license="GPLv3",
     description="'Simulating Haploid-Diploid Evolution', a wrapper for SLiM and msprime.",
-    python_requires='>3.10.0',
     install_requires = [
-        "numpy>=1.26.2",
-        "pandas>=2.1.4",
         "pyslim>=1.0.3",
-        "msprime>=1.3.0",
-        "tskit>=0.5.6",
-        "scipy>=1.11.4",
-        "toytree", #v >=3.0.0
-        "toyplot>=1.0.3",
+        "toytree>=3.0.0",
         "altair>=5.2.0",
-        "loguru>=0.6.0",
     ],
     classifiers=["Programming Language :: Python :: 3"],
 )
diff --git a/shadie/__init__.py b/shadie/__init__.py
@@ -1,12 +1,12 @@
 #!/usr/bin/env python
 
 """
-`shadie` is a wrapper around SLiM3 that implements selection on 
+`shadie` is a wrapper around SLiM that implements selection on 
 alternating hapliod/diploid lifecycles and converts user-provided 
-phylogeny into SLiM4-compatible subpopulation demography
+phylogeny into SLiM-compatible subpopulation demography
 """
 
-__version__ = "0.3.0"
+__version__ = "1.0.0"
 
 from shadie.base.defaults import NONCDS, EXON, INTRON, NEUT, DEL, BEN
 from shadie.base.mutations import mtype