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Update_FI-resources_v1 #816

Merged
merged 4 commits into from
Jan 24, 2022
Merged

Update_FI-resources_v1 #816

merged 4 commits into from
Jan 24, 2022

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siirif
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@siirif siirif commented Jan 24, 2022

more information links & relevant tools still missing. Working on them.

more information links & relevant tools still missing. Working on them.
I tried to add contributors and tools and resources into the table. Please modify, if I did something wrong :)
@siirif
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siirif commented Jan 24, 2022

I cannot make the table for the resources & tools. Could someone help. Here some input data:
resources:

  • name: Chipster
    description: Chipster is a user-friendly analysis software for high-throughput data such as RNA-seq and single cell RNA-seq. It contains analysis tools and a large reference genome collection.
    how_to_access:
    related_pages:
    tool_assembly: [CSC]
    your_role: [researcher, IT support]
    your_tasks: [data analysis]
    url: https://chipster.csc.fi/

  • name: DMPTuuli
    description: Data management planning tool (Finland)
    instance_of: DMPRoadmap
    how_to_access:
    related_pages:
    tool_assembly: [CSC]
    your_role: [researcher, data manager]
    your_tasks: [DMP]
    url: https://www.dmptuuli.fi/

  • name: Fairdata.fi
    description: With the Fairdata Services you can store, share and publish your research data with easy-to-use web tools.
    instance_of:
    how_to_access:
    related_pages:
    tool_assembly: [CSC]
    your_role: [researcher, data manager]
    your_tasks: [storage, data_publication, existing_data]
    url: https://research.csc.fi/-/fairdata-services

  • name: Federated EGA Finland
    description: FEGA allows you to store and shaare sensitive data in Finland in a way that fulfils all the requirements of the General Data Protection Regulation (GDPR).
    instance_of:
    how_to_access:
    related_pages:
    tool_assembly: [CSC]
    your_role: [researcher, data manager]
    your_tasks: [sensitive_data, data_publication, existing_data]
    your_domain: [human_data]
    url: https://research.csc.fi/-/fega

  • name: Findata
    description: The Health and Social Data Permit Authority. Findata offers services and enables secure and efficient utilisation of data materials containing health and social data.
    instance_of:
    how_to_access:
    related_pages:
    tool_assembly: [CSC]
    your_role: [researcher, data manager]
    your_tasks: [sensitive_data, existing_data]
    your_domain: [human_data]
    url: https://findata.fi/en/

  • name: Fingenious
    description: Finnish Biobank Cooperative (FINBB) connects researchers to Finnish biomedical research. Via Fingenious® services the researcher can connect to all Finnish public bio banks.
    instance_of:
    how_to_access:
    related_pages:
    tool_assembly: [CSC]
    your_role: [researcher, data manager]
    your_tasks: [sensitive_data]
    your_domain: [human_data]
    url: https://site.fingenious.fi/en/

  • name: Sensitive Data Services for Research
    description: CSC Sensitive Data Services for Research are designed to support secure sensitive data management through web-user interfaces accessible from the user's own computer
    instance_of:
    how_to_access:
    related_pages:
    tool_assembly: [CSC]
    your_role: [researcher, data manager]
    your_tasks: [sensitive_data, data_analysis, data_storage, data_publication]
    your_domain: [human_data]
    url: https://research.csc.fi/sensitive-data-services-for-research

  • name: High performance computing
    description: CSC Supercomputers Puhti, Mahti and LUMI performance ranges from medium scale simulations to one of the most competitive supercomputers in the world.
    instance_of:
    how_to_access:
    related_pages:
    tool_assembly: [CSC]
    your_role: [researcher, data manager]
    your_tasks: [data_analysis]
    url: https://research.csc.fi/computing#high-performance-computing

  • name: Cloud computing
    description: CSC offers a variety of cloud computing services: the Pouta IaaS services and the Rahti container cloud service.
    instance_of:
    how_to_access:
    related_pages:
    tool_assembly: [CSC]
    your_role: [researcher, data manager]
    your_tasks: [data_analysis]
    url: https://research.csc.fi/computing#cloud-computing

@bedroesb
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bedroesb commented Jan 24, 2022

@siirif You had it almost right! YAML (the metadata) doesn't like colons, so you have to put text with a colon in quotes so it doesn't parse it as something else. For example "CSC offers a variety of cloud computing services: the Pouta IaaS services and the Rahti container cloud service."

Other small problem I found was that the url was part of the related pages instead of the general object.

We know this way of describing the resources is not the most easy one and prone to little mistakes, that we we help out!

@siirif
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siirif commented Jan 24, 2022

I see thank you Bert! :) I'm slowly learning markdown 👍

Can you fix those or should I still try? E.g. this one "CSC offers a variety of cloud computing services: the Pouta IaaS services and the Rahti container cloud service." could just be modified: "CSC offers a variety of cloud computing service e.g. the Pouta IaaS services and the Rahti container cloud service."

This I didn't quite understand: "Other small problem I found was that the url was part of the related pages instead of the general object." Sorry and thank you so much for helping out 🥇

@bedroesb
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I already applied the obvious ones in my commit Update fi_resources.md. Because of this the checks turned green :) But please have a double check I didn't change something wrong!

@lauportell
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closes #814
Thank you Siiri for adding content and Bert for the review! I have checked the content and looks good to me - I will approve this pull request :) and if you don't need to add more content I will merge.

@bedroesb bedroesb linked an issue Jan 24, 2022 that may be closed by this pull request
@minnami
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minnami commented Jan 24, 2022

Thanks @lauportell We don't have any more content to add at this point so please merge when convenient.

@lauportell lauportell merged commit fa2b8ca into elixir-europe:master Jan 24, 2022
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Updating national resources page Finland
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