This repository contains all of the various scripts, jupyter notebooks, functions, and other snippets of code I write for my research. Mostly glorified text-parsing, but hey that's fun!
The jupyter-notebooks directory contains jupyter notebooks. Many of these run modules on the MIT eofe7 cluster.
The sbatch-scripts directory contains shell scripts for submission via sbatch to the SLURM workload manager on MIT's eofe7 cluster.
The scripts directory contains python scripts.
Sometimes I clean up my code and add comments to make it "safe" for use by others. For now, "clean" and commented notebooks and scripts are kept in the root directory. My "dirty" code is hidden away in the subdirectories—you're free to use it, but do so understanding that it was never intended to be seen by anyone but me. I'm figuring all this stuff out as I go so there are no guarantees that any of this takes the best/most efficient/most programmer-ly approach.