MRI Analysis Software

List of open source analysis software for MRI. More tools added continuously. Work in progress.

Simulation

• JEMRIS
• MRiLAB
• Simple Bloch Equation Simulator from Stanford Bloch Equations

Registration, Analysis & Segmentation

• ANTs
• FMRIB Software Library (FSL)
• FreeSurfer

Image viewers

• JIM by Xinapse
• FSLeyes
• ITKsnap

Quantitative MRI

• QUIT

Diffusion

• CAMINO

Reconstruction

• BART - Berkeley Advanced Reconstruction Toolbox
• Gadgetron
• ISMRM Raw Data format

Teaching Resources

MRI Physics

• MRI-Q

Image Analysis