Consider merging all tools into one tool

[tseemann]

Currently you have

analysisGet     assemblyGet     enaDataGet     enaGroupGet     readGet     sequenceGet

I think it would be much better to have a single executable tool ena-get (or similar) where the type of object could specified (or auto-predicted) ? Or use subcommands like samtools and other modern tools. (Note that argparse supports sub-commands.)

Is this possible?

[nicsilvester]

You only need enaDataGet and enaGroupGet. The others were left from when it was being built, but yes we can remove the main method from them.
For now enaDataGet and enaGroupGet still need to be kept separate to keep the command line usage as simple as possible. We can revisit subcommands later

[tseemann]

If they aren't needed they should be removed, or turned into modules, or at least made non-executable?

We are attempting to package this into Homebrew.

[tseemann]

Ok, i see you have fixed this now. Thank you.