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Multiple changes: 1) a separated ontofox input file was created for each ontology 2) multiple obtained owl ontologies from ontofox were merged with robot merge 3) this was merged with old version import file with robot merge 4) obsolete terms were removed
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src/ontology/imports/ONS_import_01192022_noDeprec.owl
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src/ontology/imports/ontofox_files/ONS_import_01192022.owl
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src/ontology/imports/ontofox_files/ontofox_import_file/CHEBI_ontofox_import.txt
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| ##### Import terms from CHEBI ontology ###### | ||
| [URI of the OWL(RDF/XML) output file] | ||
| https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ontofox_import_01192022.owl | ||
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| [Source ontology] | ||
| CHEBI | ||
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| [Low level source term URIs] | ||
| https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17234 | ||
| https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:422 | ||
| https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17716 | ||
| https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:15361 | ||
| http://purl.obolibrary.org/obo/CHEBI_17234 | ||
| http://purl.obolibrary.org/obo/CHEBI_422 | ||
| http://purl.obolibrary.org/obo/CHEBI_17716 | ||
| http://purl.obolibrary.org/obo/CHEBI_15361 | ||
|
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| [Top level source term URIs and target direct superclass URIs] | ||
| http://purl.obolibrary.org/obo/BFO_0000001 | ||
|
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||
| [Source term retrieval setting] | ||
| includeAllIntermediates | ||
|
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| [Source annotation URIs] | ||
| includeAllAxioms | ||
| http://www.w3.org/2000/01/rdf-schema#label | ||
| copyTo http://purl.obolibrary.org/obo/IAO_0000111 | ||
| http://www.geneontology.org/formats/oboInOwl#hasDefinition | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000115 | ||
| http://www.geneontology.org/formats/oboInOwl#hasSynonym | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000118 | ||
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| [Source annotation URIs to be excluded] | ||
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31
src/ontology/imports/ontofox_files/ontofox_import_file/FOODON_ontofox_import.txt
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| ##### Import terms from FOODON ontology ###### | ||
| [URI of the OWL(RDF/XML) output file] | ||
| https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ontofox_import_01192022.owl | ||
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| [Source ontology] | ||
| FOODON | ||
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| [Low level source term URIs] | ||
| http://purl.obolibrary.org/obo/FOODON_03420113 | ||
| http://purl.obolibrary.org/obo/FOODON_03420245 | ||
| http://purl.obolibrary.org/obo/FOODON_00001304 | ||
| http://purl.obolibrary.org/obo/FOODON_03470107 | ||
| http://purl.obolibrary.org/obo/FOODON_03420244 | ||
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| [Top level source term URIs and target direct superclass URIs] | ||
| http://purl.obolibrary.org/obo/BFO_0000001 | ||
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| [Source term retrieval setting] | ||
| includeAllIntermediates | ||
|
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| [Source annotation URIs] | ||
| includeAllAxioms | ||
| http://www.w3.org/2000/01/rdf-schema#label | ||
| copyTo http://purl.obolibrary.org/obo/IAO_0000111 | ||
| http://www.geneontology.org/formats/oboInOwl#hasDefinition | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000115 | ||
| http://www.geneontology.org/formats/oboInOwl#hasSynonym | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000118 | ||
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| [Source annotation URIs to be excluded] | ||
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32
src/ontology/imports/ontofox_files/ontofox_import_file/GO_ontofox_import.txt
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| ##### Import terms from GO ontology ###### | ||
| [URI of the OWL(RDF/XML) output file] | ||
| https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ontofox_import_01192022.owl | ||
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| [Source ontology] | ||
| GO | ||
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| [Low level source term URIs] | ||
| http://purl.obolibrary.org/obo/GO_0061621 | ||
| http://purl.obolibrary.org/obo/GO_0019661 | ||
| http://purl.obolibrary.org/obo/GO_0019244 | ||
| http://purl.obolibrary.org/obo/GO_0019514 | ||
| http://purl.obolibrary.org/obo/GO_0004565 | ||
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| [Top level source term URIs and target direct superclass URIs] | ||
| http://purl.obolibrary.org/obo/BFO_0000001 | ||
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| [Source term retrieval setting] | ||
| includeAllIntermediates | ||
|
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| [Source annotation URIs] | ||
| includeAllAxioms | ||
| http://www.w3.org/2000/01/rdf-schema#label | ||
| copyTo http://purl.obolibrary.org/obo/IAO_0000111 | ||
| http://www.geneontology.org/formats/oboInOwl#hasDefinition | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000115 | ||
| http://www.geneontology.org/formats/oboInOwl#hasSynonym | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000118 | ||
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| [Source annotation URIs to be excluded] | ||
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26
src/ontology/imports/ontofox_files/ontofox_import_file/HP_ontofox_import.txt
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| ##### Import terms from HP Ontology ###### | ||
| [URI of the OWL(RDF/XML) output file] | ||
| https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ontofox_import_01192022.owl | ||
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| [Source ontology] | ||
| HP | ||
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| [Low level source term URIs] | ||
| http://purl.obolibrary.org/obo/HP_0004789 | ||
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| [Top level source term URIs and target direct superclass URIs] | ||
| http://purl.obolibrary.org/obo/BFO_0000001 | ||
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| [Source term retrieval setting] | ||
| includeAllIntermediates | ||
|
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| [Source annotation URIs] | ||
| includeAllAxioms | ||
| http://www.w3.org/2000/01/rdf-schema#label | ||
| copyTo http://purl.obolibrary.org/obo/IAO_0000111 | ||
| http://www.geneontology.org/formats/oboInOwl#hasDefinition | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000115 | ||
| http://www.geneontology.org/formats/oboInOwl#hasSynonym | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000118 | ||
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| [Source annotation URIs to be excluded] |
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28
src/ontology/imports/ontofox_files/ontofox_import_file/IAO_ontofox_import.txt
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| ##### Import terms from IAO ontology ###### | ||
| [URI of the OWL(RDF/XML) output file] | ||
| https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ontofox_import_01192022.owl | ||
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| [Source ontology] | ||
| IAO | ||
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| [Low level source term URIs] | ||
| http://purl.obolibrary.org/obo/IAO_0000027 | ||
| http://purl.obolibrary.org/obo/IAO_0000221 | ||
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| [Top level source term URIs and target direct superclass URIs] | ||
| http://purl.obolibrary.org/obo/BFO_0000001 | ||
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| [Source term retrieval setting] | ||
| includeAllIntermediates | ||
|
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| [Source annotation URIs] | ||
| includeAllAxioms | ||
| http://www.w3.org/2000/01/rdf-schema#label | ||
| copyTo http://purl.obolibrary.org/obo/IAO_0000111 | ||
| http://www.geneontology.org/formats/oboInOwl#hasDefinition | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000115 | ||
| http://www.geneontology.org/formats/oboInOwl#hasSynonym | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000118 | ||
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| [Source annotation URIs to be excluded] | ||
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50
src/ontology/imports/ontofox_files/ontofox_import_file/NCBITaxon_ontofox_import.txt
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| ##### Import terms from NCBITaxon ontology ###### | ||
| [URI of the OWL(RDF/XML) output file] | ||
| https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ontofox_import_01192022.owl | ||
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| [Source ontology] | ||
| NCBITaxon | ||
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| [Low level source term URIs] | ||
| http://purl.obolibrary.org/obo/NCBITaxon_434 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_292480 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_2 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_1678 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_1535326 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_1716 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_1350 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_4751 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_227979 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_4910 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_57493 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_2759736 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_2767842 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_1578 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_1357 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_2767893 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_1243 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_2767886 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_2742598 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_90243 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_838 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_255204 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_4930 | ||
| http://purl.obolibrary.org/obo/NCBITaxon_1301 | ||
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| [Top level source term URIs and target direct superclass URIs] | ||
| http://purl.obolibrary.org/obo/BFO_0000001 | ||
|
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| [Source term retrieval setting] | ||
| includeAllIntermediates | ||
|
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| [Source annotation URIs] | ||
| includeAllAxioms | ||
| http://www.w3.org/2000/01/rdf-schema#label | ||
| copyTo http://purl.obolibrary.org/obo/IAO_0000111 | ||
| http://www.geneontology.org/formats/oboInOwl#hasDefinition | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000115 | ||
| http://www.geneontology.org/formats/oboInOwl#hasSynonym | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000118 | ||
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| [Source annotation URIs to be excluded] | ||
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29 changes: 29 additions & 0 deletions
29
src/ontology/imports/ontofox_files/ontofox_import_file/NCIT_ontofox_import.txt
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| ##### Import terms from NCIT ontology ###### | ||
| [URI of the OWL(RDF/XML) output file] | ||
| https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ontofox_import_01192022.owl | ||
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| [Source ontology] | ||
| NCIT | ||
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| [Low level source term URIs] | ||
| http://purl.obolibrary.org/obo/NCIT_C173982 | ||
| http://purl.obolibrary.org/obo/NCIT_C116012 | ||
| http://purl.obolibrary.org/obo/NCIT_C76926 | ||
| http://purl.obolibrary.org/obo/NCIT_C28166 | ||
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| [Top level source term URIs and target direct superclass URIs] | ||
| http://purl.obolibrary.org/obo/BFO_0000001 | ||
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| [Source term retrieval setting] | ||
| includeAllIntermediates | ||
|
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| [Source annotation URIs] | ||
| includeAllAxioms | ||
| http://www.w3.org/2000/01/rdf-schema#label | ||
| copyTo http://purl.obolibrary.org/obo/IAO_0000111 | ||
| http://www.geneontology.org/formats/oboInOwl#hasDefinition | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000115 | ||
| http://www.geneontology.org/formats/oboInOwl#hasSynonym | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000118 | ||
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| [Source annotation URIs to be excluded] |
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27
src/ontology/imports/ontofox_files/ontofox_import_file/OBI_ontofox_import.txt
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| ##### Import terms from OBI ontology ###### | ||
| [URI of the OWL(RDF/XML) output file] | ||
| https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ontofox_import_01192022.owl | ||
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| [Source ontology] | ||
| OBI | ||
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| [Low level source term URIs] | ||
| http://purl.obolibrary.org/obo/OBI_0001938 | ||
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| [Top level source term URIs and target direct superclass URIs] | ||
| http://purl.obolibrary.org/obo/BFO_0000001 | ||
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| [Source term retrieval setting] | ||
| includeAllIntermediates | ||
|
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| [Source annotation URIs] | ||
| includeAllAxioms | ||
| http://www.w3.org/2000/01/rdf-schema#label | ||
| copyTo http://purl.obolibrary.org/obo/IAO_0000111 | ||
| http://www.geneontology.org/formats/oboInOwl#hasDefinition | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000115 | ||
| http://www.geneontology.org/formats/oboInOwl#hasSynonym | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000118 | ||
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| [Source annotation URIs to be excluded] | ||
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30
src/ontology/imports/ontofox_files/ontofox_import_file/OMP_ontofox_import.txt
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| ##### Import terms from OMP ontology ###### | ||
| [URI of the OWL(RDF/XML) output file] | ||
| https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ontofox_import_01192022.owl | ||
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| [Source ontology] | ||
| OMP | ||
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| [Low level source term URIs] | ||
| http://purl.obolibrary.org/obo/OMP_0007138 | ||
| http://purl.obolibrary.org/obo/OMP_0007952 | ||
| http://purl.obolibrary.org/obo/OMP_0007519 | ||
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| [Top level source term URIs and target direct superclass URIs] | ||
| http://purl.obolibrary.org/obo/BFO_0000001 | ||
|
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| [Source term retrieval setting] | ||
| includeAllIntermediates | ||
|
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| [Source annotation URIs] | ||
| includeAllAxioms | ||
| http://www.w3.org/2000/01/rdf-schema#label | ||
| copyTo http://purl.obolibrary.org/obo/IAO_0000111 | ||
| http://www.geneontology.org/formats/oboInOwl#hasDefinition | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000115 | ||
| http://www.geneontology.org/formats/oboInOwl#hasSynonym | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000118 | ||
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| [Source annotation URIs to be excluded] | ||
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29 changes: 29 additions & 0 deletions
29
src/ontology/imports/ontofox_files/ontofox_import_file/PATO_ontofox_import.txt
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,29 @@ | ||
| ##### Import terms from PATO ontology ###### | ||
| [URI of the OWL(RDF/XML) output file] | ||
| https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ontofox_import_01192022.owl | ||
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| [Source ontology] | ||
| PATO | ||
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| [Low level source term URIs] | ||
| http://purl.obolibrary.org/obo/PATO_0000033 | ||
| http://purl.obolibrary.org/obo/PATO_0001309 | ||
| http://purl.obolibrary.org/obo/PATO_0000146 | ||
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| [Top level source term URIs and target direct superclass URIs] | ||
| http://purl.obolibrary.org/obo/BFO_0000001 | ||
|
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| [Source term retrieval setting] | ||
| includeAllIntermediates | ||
|
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| [Source annotation URIs] | ||
| includeAllAxioms | ||
| http://www.w3.org/2000/01/rdf-schema#label | ||
| copyTo http://purl.obolibrary.org/obo/IAO_0000111 | ||
| http://www.geneontology.org/formats/oboInOwl#hasDefinition | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000115 | ||
| http://www.geneontology.org/formats/oboInOwl#hasSynonym | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000118 | ||
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| [Source annotation URIs to be excluded] | ||
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39
src/ontology/imports/ontofox_files/ontofox_import_file/RO_ontofox_import.txt
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| ##### Import terms from RO ontology ###### | ||
| [URI of the OWL(RDF/XML) output file] | ||
| https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ontofox_import_01192022.owl | ||
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| [Source ontology] | ||
| RO | ||
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| [Low level source term URIs] | ||
| http://purl.obolibrary.org/obo/RO_0002500 | ||
| http://purl.obolibrary.org/obo/RO_0002411 | ||
| http://purl.obolibrary.org/obo/RO_0001000 | ||
| http://purl.obolibrary.org/obo/RO_0002507 | ||
| http://purl.obolibrary.org/obo/RO_0002084 | ||
| http://purl.obolibrary.org/obo/RO_0002248 | ||
| http://purl.obolibrary.org/obo/RO_0002018 | ||
| http://purl.obolibrary.org/obo/RO_0002233 | ||
| http://purl.obolibrary.org/obo/RO_0002234 | ||
| http://purl.obolibrary.org/obo/RO_0000086 | ||
| http://purl.obolibrary.org/obo/RO_0000087 | ||
| http://purl.obolibrary.org/obo/RO_0000052 | ||
| http://purl.obolibrary.org/obo/RO_0002574 | ||
|
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| [Top level source term URIs and target direct superclass URIs] | ||
| http://purl.obolibrary.org/obo/BFO_0000001 | ||
|
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| [Source term retrieval setting] | ||
| includeAllIntermediates | ||
|
|
||
| [Source annotation URIs] | ||
| includeAllAxioms | ||
| http://www.w3.org/2000/01/rdf-schema#label | ||
| copyTo http://purl.obolibrary.org/obo/IAO_0000111 | ||
| http://www.geneontology.org/formats/oboInOwl#hasDefinition | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000115 | ||
| http://www.geneontology.org/formats/oboInOwl#hasSynonym | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000118 | ||
|
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| [Source annotation URIs to be excluded] | ||
|
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30 changes: 30 additions & 0 deletions
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src/ontology/imports/ontofox_files/ontofox_import_file/SIO_ontofox_import.txt
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| ##### Import terms from SIO ontology ###### | ||
| [URI of the OWL(RDF/XML) output file] | ||
| https://raw.githubusercontent.com/enpadasi/Ontology-for-Nutritional-Studies/master/src/ontology/imports/ontofox_import_01192022.owl | ||
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| [Source ontology] | ||
| SIO | ||
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| [Low level source term URIs] | ||
| http://semanticscience.org/resource/SIO_000221 | ||
| http://semanticscience.org/resource/SIO_000300 | ||
| http://semanticscience.org/resource/SIO_000217 | ||
| http://semanticscience.org/resource/SIO_000228 | ||
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| [Top level source term URIs and target direct superclass URIs] | ||
| http://purl.obolibrary.org/obo/BFO_0000001 | ||
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| [Source term retrieval setting] | ||
| includeAllIntermediates | ||
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| [Source annotation URIs] | ||
| includeAllAxioms | ||
| http://www.w3.org/2000/01/rdf-schema#label | ||
| copyTo http://purl.obolibrary.org/obo/IAO_0000111 | ||
| http://www.geneontology.org/formats/oboInOwl#hasDefinition | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000115 | ||
| http://www.geneontology.org/formats/oboInOwl#hasSynonym | ||
| mapTo http://purl.obolibrary.org/obo/IAO_0000118 | ||
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| [Source annotation URIs to be excluded] | ||
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