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Background
Users may need to generate IDT notation for modified RNA to be able to order this kind of molecules through IDT web site.
This task dedicated to the export of presets with defined subunits.
Requirements
There could be four types of IDT monomers for export:
Standard monomers - nucleotides, which could be exported as [s]<Base>[*]
where: Base - standard unmodified nucleotide base symbol (see table below) s - optional symbol of the sugar that makes the nucleotide (see table below). If not specified, standard sugar deoxy-ribose (dR) is implied. * - optional indicator of modified phosphate. If specified, indicates that Phosphorothioate (sP) is included into nucleotide, otherwise standard phosphate (P) is implied.
The last nucleotide is considered to lack phosphate, so * couldn't be the last symbol in the sequence.
Examples
TBD
The text was updated successfully, but these errors were encountered:
olganaz
changed the title
Export modified RNA to IDT format
Export of standard IDT monomers
Apr 3, 2024
olganaz
changed the title
Export of standard IDT monomers
Export of RNA presets to IDT notation (standard IDT monomers)
Apr 3, 2024
Background
Users may need to generate IDT notation for modified RNA to be able to order this kind of molecules through IDT web site.
This task dedicated to the export of presets with defined subunits.
Requirements
There could be four types of IDT monomers for export:
[s]<Base>[*]
where:
Base
- standard unmodified nucleotide base symbol (see table below)s
- optional symbol of the sugar that makes the nucleotide (see table below). If not specified, standard sugar deoxy-ribose (dR) is implied.*
- optional indicator of modified phosphate. If specified, indicates that Phosphorothioate (sP) is included into nucleotide, otherwise standard phosphate (P) is implied.The last nucleotide is considered to lack phosphate, so * couldn't be the last symbol in the sequence.
Examples
TBD
The text was updated successfully, but these errors were encountered: