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update docs on limma usage
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sreichl committed Jan 5, 2023
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# Usage
Here are some tips for the usage of this workflow:
- Limma usage and best practices are not explained. For deatiled documentation, tutorials and insctructions see [Resources](#resources). To understand the implementation at hand see [limma.R](./workflow/scripts/limma.R).
- Perform your first run(s) with loose filtering options/cut-offs and use the same for visualization to see if further filtering is even necessary or useful.
- Test minimal complex configurations on a subset of your data.
- Start with simple models and try to understand the results.
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