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results_main_study_Pyroseq_1.txt
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results_main_study_Pyroseq_1.txt
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order locus_identifier chrom chromstart_hg19 chromend_hg19 locus_description probe_id probe_pos probe_strand genome_browser_URL locus_sequence cpg_island_status gene_status gene_name CpG_content GC_content obsExp_ratio repeat_content assay_design_status assay_design_summary 1T_meth 1N_meth 2T_meth 2N_meth 3T_meth 3N_meth 4T_meth 4N_meth 5T_meth 5N_meth 6T_meth 6N_meth KG1_K3_meth KG1_T1_meth KG1a_K1_meth KG1a_T1_meth IVM_1_meth IVM_2_meth IVM_3_meth IVM_4_meth IVM_5_meth IVM_6_meth B_33773_meth B_14129_meth B_77007_meth B_39141_meth B_83366_meth B_96050_meth HCT116_meth HCT15_meth HCT116P_meth HCT15P_meth 1T_conf 1N_conf 2T_conf 2N_conf 3T_conf 3N_conf 4T_conf 4N_conf 5T_conf 5N_conf 6T_conf 6N_conf KG1_Kx_conf KG1_Tx_conf KG1a_Kx_conf KG1a_Tx_conf IVM_1_conf IVM_2_conf IVM_3_conf IVM_4_conf IVM_5_conf IVM_6_conf B_33773_conf B_14129_conf B_77007_conf B_39141_conf B_83366_conf B_96050_conf HCT116_conf HCT15_conf HCT116P_conf HCT15P_conf
1 mandatory_1 chr4 154710438 154710560 Promoter CpG island of the SFRP2 gene cg22178613 154710499 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr4%3A154710438-154710560 TTTCTTTAAACAACAAACAGAGAAGCCTGGCCGCTGCGCCCCCACAGTGAGCGAGCAGGG[CG]CGGGCTGCGGGAGTGGGGGGCACGCAGGGCACCCCGCGAGCGGCCTCGCGACCAGGTACT Island TSS1500 SFRP2 0.0984 0.68 0.853 0 completed PyroMark CpG 56 22 44 23 23 16 26 15 38 25 34 14 69 58 78 48 4 5 8 6 11 18 74 21 16 14 12 13 76 73 72 70 7 2 6 5 4 2 2 4 6 2 4 2 8 7 4 4 1 1 3 3 5 2 7 1 1 2 3 1 6 5 6 5
2 mandatory_2 chr1 110052397 110052519 Promoter CpG island of the AMIGO1 gene cg21646186 110052457 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr1%3A110052397-110052519 GCGGCGGGGGCGGGGCGCACGTGCGTGTGTTTGTGTCGGAGCCGGCCGGGCGGACGCGCG[CG]GGGTCGTTCCCTCAACCAGCGAGCTCCGGACGCTGAGCTAAAGACGAAAATTGGCAGGAA Island TSS200 AMIGO1 0.156 0.697 1.35 0.148 completed PyroMark CpG 0 3 1 1 2 1 1 2 1 2 1 2 3 2 64 22 4 7 8 10 5 22 11 2 3 1 2 2 13 2 11 2 1 2 1 1 0 1 1 0 1 0 1 0 0 0 4 4 1 4 7 3 4 5 6 3 0 2 2 2 9 2 6 2
3 mandatory_3 chr4 7526610 7526732 DNase hypersensitive site in a long intron of the SORCS2 gene cg14372037 7526670 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr4%3A7526610-7526732 AGAGAGAAACATGCTCCCCATAGAAAGACGAGGGCATCCATCATTGAGGATCCTGTCCCC[CG]AGCACCCCTGGTCTGCAACAGAAACCTGGCAGGTTCCAGAGAGCGGGAGCTTAACTCGGG Body SORCS2 0.0328 0.566 0.41 0 completed PyroMark CpG 28 44 43 33 32 46 36 45 46 43 27 35 42 22 44 22 7 6 6 7 6 15 67 49 45 47 47 48 68 18 68 22 3 3 1 1 3 8 6 5 3 2 2 1 4 2 3 2 2 1 1 2 6 1 3 2 1 2 1 0 1 3 3 2
4 mandatory_4 chr2 164593203 164593325 Promoter CpG island of the FIGN gene cg04457196 164593263 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr2%3A164593203-164593325 CCCCTCTGCGCACGGGACGGGATCTGGTCTCGAGAGCCTGGACCTCACCGGCACCCTCCC[CG]GGGCCCCCAGCACCAGCCAGAAAACGACTTGATCTGCTTAGAAGAGGCAACTTCGGGGAG Island TSS1500 FIGN 0.0656 0.656 0.616 0 completed PyroMark CpG 21 5 53 4 19 7 23 6 37 11 27 5 56 45 96 46 1 2 0 2 6 13 94 13 5 5 6 5 97 92 94 94 3 2 2 1 3 1 2 0 1 6 3 1 1 1 1 5 1 1 0 3 6 3 0 2 1 0 1 1 2 4 2 1
5 mandatory_5 chr2 9518263 9518385 DNase hypersensitive site in an intron of the ASAP2 gene cg19426625 9518323 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr2%3A9518263-9518385 GATATTGAAAATGTAATTGGTTTCCTTCTCATGGAAGCAGCAGGTGCCACTTCCTGAGAT[CG]CCTTTCTGTCTCCACTTTGTGCAGGGGCACAAAGCTCACTGCCCCTCCTCAGAATGTGAC S_Shelf Body;Body ASAP2;ASAP2 0.0082 0.492 0.137 0 completed PyroMark CpG 86 83 83 75 73 81 86 78 81 70 74 70 82 44 65 30 3 3 3 2 6 8 83 51 47 47 49 50 83 80 83 81 2 2 3 4 2 3 2 2 2 1 2 4 0 1 1 6 1 2 1 0 6 1 2 2 1 1 3 1 2 1 1 1
6 mandatory_6 chr17 80709089 80709211 Promoter CpG island of the TBCD gene cg00960700 80709149 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr17%3A80709089-80709211 TCCGCTCGTGGGGCTGCTTTCAGGGCCAGACGCACGGCGAGCTGTGCACGGACGTTTTTG[CG]GCGATTCAGGGGAAACGCACGCGGACCCGGTAGCCAAGGCCAAAGTCGGCGCAGCGCCCA Island TSS1500 TBCD 0.131 0.68 1.14 0 completed PyroMark CpG 55 13 7 14 13 19 48 18 30 17 16 10 93 72 95 52 5 1 5 2 8 18 95 14 8 5 4 4 94 93 94 94 4 4 1 1 5 3 3 7 4 6 4 2 5 3 1 5 4 1 5 1 12 2 2 1 2 2 2 2 2 2 1 2
7 mandatory_7 chr3 142837934 142838056 Promoter CpG island of the CHST2 gene cg19442495 142837994 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr3%3A142837934-142838056 GGGGCTCCGCATGTGGGGCACAATGAAACAAGAGCAGCCCCGGCCAGAGGTCCAGTAAAG[CG]GAAAGACGGTCCCGCCCGCACACCCCTCCGGAAAACTGAAGCGTCTCCTCTGACCCCCAA Island TSS1500 CHST2 0.0656 0.631 0.668 0 completed PyroMark CpG 43 2 65 3 18 1 31 1 58 3 42 1 1 1 0 0 1 3 1 2 5 12 59 10 1 2 1 0 57 98 63 97 4 0 5 4 5 1 2 1 2 1 5 1 1 1 0 0 2 2 1 0 9 2 3 2 0 1 1 1 6 0 3 1
8 mandatory_8 chr7 140218077 140218199 DNase hypersensitive site downstream of the DENND2A gene cg06310157 140218137 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr7%3A140218077-140218199 GCTCCGAGGAGCACCTCATTTCTGTTGCCCATCACCACTCCTCTTAGCTCCATTGCTGAG[CG]GCCGGATGGGACGAACGAGGGGAACGTGTAGGGCAGGACAGGCTCCTCTTGGCCTTGGCA 0.0492 0.607 0.535 0 completed PyroMark CpG 89 85 88 85 73 88 87 84 83 84 62 79 93 64 91 47 6 4 3 4 7 13 91 89 90 89 88 90 90 85 90 87 1 2 1 1 1 2 1 5 2 2 4 2 1 2 1 3 3 0 5 0 3 2 1 2 1 2 2 2 1 3 2 1
9 mandatory_9 chr7 26206518 26206640 Putative gene-regulatory elements in the first intron of the NFE2L3 gene cg07945582 26206578 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr7%3A26206518-26206640 AAAGCAGGTCTCCATCCCTCCTCCTCCAGATGAATAAATGAAAGGCCTAGCTAAAGCAGT[CG]AGGCTGTTCACAAAGGGTATTTTCAGGGGCAAACCCTCTACCACATGACTCAGATCCCAG Body NFE2L3 0.0082 0.492 0.139 0 completed PyroMark CpG 19 39 15 28 30 36 26 37 25 28 24 33 79 32 42 19 1 1 0 2 1 7 83 36 35 35 34 35 83 45 84 44 2 1 2 2 1 2 1 2 2 2 0 2 2 1 1 3 0 1 0 1 1 1 3 3 3 0 1 1 3 1 1 2
10 mandatory_10 chr7 3025573 3025695 DNase hypersensitive site in a long intron of the CARD11 gene cg15025536 3025633 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr7%3A3025573-3025695 ACCATTAATTTCCCAAACATGTTCGGAAAAACCCAATCCATCTGGTCGGTGCCGACATCA[CG]CTAATATCTACTCAAGCGTGTCCGTGTGTGGAACACAGGGTCTGCAGTCCCAGCGTGTGT 5'UTR CARD11 0.0574 0.5 0.93 0 completed PyroMark CpG 94 95 95 94 96 90 95 95 95 86 93 93 98 84 97 64 10 9 11 7 5 20 94 96 95 95 96 96 98 89 96 94 2 1 1 1 2 6 0 1 1 4 1 1 1 5 1 6 4 1 6 2 7 3 4 1 1 0 1 0 2 4 1 1
11 mandatory_11 chr7 138229928 138230050 Intronic region of the TRIM24 gene cg12743416 138229988 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr7%3A138229928-138230050 GTATCTATATATTCACATAAAAACTATCAAGAATCTTACTGTCTTGCCTTCTCTTCCTGG[CG]TGGAGGCACCAGCATGGTGACTGAGGTCACTGCACATTGGAGAGGGTTGGGGAACCGCAA Body;Body TRIM24;TRIM24 0.0164 0.467 0.301 0.0164 completed PyroMark CpG 7 7 7 7 7 7 7 7 62 47 52 45 7 7 7 7 7 7 8 8 7 14 42 30 30 29 28 28 42 7 40 7 1 0 0 0 0 0 0 1 3 4 2 4 0 0 0 1 0 1 1 1 1 3 2 3 1 1 2 3 2 0 1 0
12 mandatory_12 chr2 42275679 42275801 DNase hypersensitive site overlapping with the first exon of the PKDCC gene cg12630082 42275739 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr2%3A42275679-42275801 GCTGGCCCCCGGCTCCCGGCCCAGGCTCCCCCGGCCCGGGCCCGCGCCTGGGCTGCGCCG[CG]CTTCGCAACGTGTCCGGCGCGCAGTACATGGGCTCAGGCTACACCAAGGCCGTGTACCGG 1stExon PKDCC 0.131 0.779 0.877 0.418 completed PyroMark CpG 50 8 3 4 6 6 2 9 3 9 7 16 89 73 99 69 1 3 4 4 8 8 100 21 12 9 8 10 98 57 98 58 2 2 0 1 4 3 1 4 1 2 2 5 1 2 0 2 0 2 5 1 2 6 0 7 0 0 2 1 1 2 1 1
13 mandatory_13 chr15 100249125 100249247 Degenerate LINE L2 repeat element in an intron of the MEF2A gene cg07382129 100249185 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr15%3A100249125-100249247 ATTGAGACTAGAGAGGTAAGTAATGATTTGTAGACTATGTCAAGGATTTTGGAAACTGTC[CG]GAGAGCATTGGGGAGCCATAAAAAACTTTTGAAGTAGAGGAGTGCCATGACCATATTTGT Body;Body;Body;Body MEF2A;MEF2A;MEF2A;MEF2A 0.0082 0.393 0.256 1 completed PyroMark CpG 50 60 37 47 41 46 32 43 27 45 55 61 95 62 95 44 8 6 6 7 10 23 7 86 92 93 93 94 7 7 7 7 4 1 1 2 1 3 3 2 1 4 1 2 0 0 0 1 2 1 0 1 5 0 0 1 1 1 0 0 0 1 0 0
14 mandatory_14 chr4 147557798 147557920 Intergenic region upstream of the POU4F2 gene cg01572513 147557858 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr4%3A147557798-147557920 ATAATTCCTTCCTGGCCCAGTCATAATTTGTTTAGAGATGTTGTTCTACTTCTTTCAAAG[CG]CTATTCGCACTATAATTAAATGATACTCAAGCTTTTAACTTTGATTTATTTCATTTCTTG N_Shore 0.0164 0.311 0.707 0 completed PyroMark CpG 55 20 53 30 36 25 54 30 54 33 45 21 95 76 94 47 6 2 2 9 2 18 95 21 15 15 18 18 92 60 94 67 8 6 2 12 9 8 8 5 13 8 1 2 1 2 2 6 4 1 2 5 3 4 3 2 3 3 4 5 2 2 2 6
15 mandatory_15 chr17 75369163 75369285 Promoter CpG island of the SEPT9 gene cg15044248 75369224 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr17%3A75369163-75369285 TGAGGCCGCGTCTCTCGCCGTCCCCTGGGCGCGGGCCAGGCGGGGAGGAGGGGGGCGCTC[CG]GTCGTGTGCCCAGGACTGTCCCCCAGCGGCCACTCGGGCCCCAGCCCCCCAGGCCTGGCC Island TSS200;5'UTR;Body;Body SEPT9;SEPT9;SEPT9;SEPT9 0.0984 0.803 0.61 0 completed PyroMark CpG 70 6 67 1 41 1 52 1 56 1 38 1 1 1 2 3 5 5 3 8 8 8 95 21 2 1 1 2 97 96 94 95 1 2 2 2 5 1 2 0 7 1 4 1 0 0 1 2 4 2 3 10 7 1 4 3 1 1 0 1 1 1 2 1
16 mandatory_16 chr7 93520227 93520349 5' UTR of the TFPI2 gene overlapping with the shore of a promoter CpG island cg24084681 93520288 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr7%3A93520227-93520349 AAAGTTGAACCTGCCTCCCAAACTTTCTCCTGTAGTCCAGACGGGGACGCCCTGAGGGAG[CG]TTTGTGTCAGTAATGGGAAATCTGCAAGCTAGACGGAAATGACCTGCTAGTGATTGCGCT S_Shore TSS1500 TFPI2 0.041 0.516 0.619 0 completed PyroMark CpG 43 3 59 12 19 5 40 3 45 4 34 6 30 24 59 31 1 1 2 1 1 9 95 8 2 2 2 3 93 47 94 47 7 0 3 4 3 4 2 1 7 1 4 2 4 1 - 2 1 1 2 1 1 3 1 0 1 2 0 0 2 4 1 4
17 recommended_1 chr5 54281210 54281332 First exon of the ESM1 gene cg06837426 54281270 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr5%3A54281210-54281332 CCTCTTGCAGCGCGGGCTGCTTTTGCACTCACTGCTGTCACAGTGTTGAGGGCAGTCCAC[CG]CATAATTATTGCTCCAGGCGGCCACCAGGTGTGCAGGCACGAGGAGCGTGGTCAGCAGCA 1stExon;1stExon ESM1;ESM1 0.0492 0.607 0.535 0 completed PyroMark CpG 75 65 53 69 63 60 82 84 73 61 73 66 94 70 93 49 0 1 0 2 2 17 85 61 61 60 60 60 88 46 85 50 7 2 3 1 3 4 1 3 0 6 4 3 1 2 1 2 0 1 0 2 3 2 5 0 2 4 2 2 1 2 2 1
18 recommended_2 chr20 20349180 20349302 Promoter CpG island of the INSM1 gene cg00648301 20349240 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr20%3A20349180-20349302 CCCCGAGGCTGCGCACCCCGCGCCGCTCTACAGTCCCACGCGGCCCGTGAGCCGCGAGCA[CG]AGAAGCACAAGTACTTCGAACGCAGCTTCAACCTGGGCTCGCCGGTCTCGGCCGAGTCCT Island 1stExon INSM1 0.139 0.697 1.19 0 completed PyroMark CpG 2 1 18 1 1 1 2 2 4 1 5 1 14 17 93 56 9 8 11 6 11 20 95 9 3 2 2 2 90 73 93 76 2 1 5 0 0 1 0 0 2 0 3 0 1 2 1 3 3 0 6 1 5 3 3 4 1 1 0 1 1 6 2 2
19 recommended_3 chr19 38085645 38085767 Promoter CpG island of the ZNF540 and ZNF571 genes cg27321876 38085705 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr19%3A38085645-38085767 CCGGCGCAGACAAGCTCCGTGCGTCAAGACATAACAGCGTAAGTGTACGACGTTGCGCAG[CG]ACGCGGGGGCCTTCGGGAAATGTAGTCTACAACTGGAAACCGGCCGGATCGTGTCTGCGC Island 5'UTR;TSS200 ZNF540;ZNF571 0.131 0.607 1.44 0 completed PyroMark CpG 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 1 2 1 0 2 1 9 98 11 1 0 0 1 95 1 98 1 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 1 1 1 0 2 2 2 0 4 1 0 0 1 1 2 1 1
20 recommended_4 chr16 15489129 15489251 Degenerate SINE Alu and LINE L1 repeat elements upstream of the MPV17L promoter cg06405517 15489189 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr16%3A15489129-15489251 CTATCTAATTTCAAAATGTTTTCATCACTCCAAAAAATAACCCCATATGGGAGGCCGAGG[CG]GGCAGGTCACTCGAGACCAGCCTGGCCAACATATTGAAACCCCGTCTCCACTAAAGATAC N_Shore TSS1500;TSS1500 MPV17L;MPV17L 0.0328 0.467 0.634 1 completed PyroMark CpG 81 93 55 66 87 85 86 97 94 89 67 78 100 76 100 57 8 10 10 14 15 29 100 100 99 100 99 98 100 87 98 92 1 2 2 1 2 3 2 2 3 2 2 1 0 2 0 2 4 3 6 5 2 0 0 0 1 0 2 1 0 1 2 1
21 recommended_5 chr7 27154978 27155100 CpG island in the first intron of the HOXA3 gene cg18680977 27155038 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr7%3A27154978-27155100 AACTTGAAAGGGGGAGCTGGCCGCGTAGGAGGTGAGAGCCAGCCGCAAAAATCCGTTCGG[CG]GCATTTTCTCTTCAAACCCGCCCGGTCGGATGTGGCATTTGAAGAAAGAAGGCGTGGGTC Island 5'UTR;TSS1500;5'UTR HOXA3;HOXA3;HOXA3 0.082 0.574 1.04 0 completed PyroMark CpG 24 24 23 24 32 25 20 29 23 34 37 34 89 66 90 46 1 3 2 2 2 7 0 81 86 90 88 87 1 1 0 1 1 4 1 5 2 2 3 2 1 2 3 4 0 4 0 2 1 1 2 2 3 5 1 2 2 4 2 0 0 1 0 0
22 recommended_6 chr10 7451253 7451375 Promoter CpG island of the SFMBT2 gene cg09060610 7451313 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr10%3A7451253-7451375 CCCCACCTACTCGGGGATCTACCCGCGCAGGATCCAGCACACACAAGGCGAGAGCTAGCT[CG]TCTCCTAGAAAGACAAAATAAATCACTCCCTCTGCCCTCATGTACTTTACACCACGTGTC Island 5'UTR SFMBT2 0.0492 0.541 0.74 0 completed PyroMark CpG 21 1 40 0 11 1 25 1 27 1 12 0 36 26 0 1 10 11 14 15 25 10 42 6 1 3 2 3 47 44 44 44 2 1 2 0 2 2 2 2 1 1 4 1 1 3 1 1 5 8 7 6 9 2 3 1 1 1 0 0 7 5 5 5
23 recommended_7 chr17 7165194 7165316 CpG island overlapping with the first coding exon of the CLDN7 gene cg15298719 7165254 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr17%3A7165194-7165316 CGTGACGCAGTCCATCCACAGCCCCTTGTACATGGCCTGGGCCGTGATGATGTTGTCACC[CG]CATAGGAGCTCATCTGCCACTGCGGGATGGCGGTGCAGGCCACCAGACCCACCCAGCCCA Island 1stExon CLDN7 0.0492 0.648 0.475 0 completed PyroMark CpG 18 16 22 19 35 16 20 19 25 21 25 21 94 68 95 63 5 5 4 3 9 22 1 38 44 46 45 43 1 2 1 2 6 1 1 5 3 1 4 4 3 3 0 1 0 7 1 8 1 2 4 3 1 3 1 1 5 2 4 4 0 1 1 0
24 recommended_8 chr2 9614517 9614639 Promoter CpG island of the IAH1 gene cg05986044 9614577 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr2%3A9614517-9614639 GGTGAGCAAGCGCGGAGGCCGAGCTTCTTGCAAACGGACTCCAAGGGGCAACGACCTTCG[CG]CGTCACCAAAGTGACTGCGTGGGTGCCCACGAGCCCGGCTCCCGCAACCCACGGGCGGCC Island TSS200 IAH1 0.115 0.689 0.969 0 completed PyroMark CpG 1 2 1 1 1 2 1 2 1 1 1 1 63 67 1 1 2 2 2 2 4 14 35 5 2 1 1 1 33 1 33 2 0 0 0 0 0 1 0 0 1 0 0 1 6 2 0 0 1 0 1 0 4 1 8 2 1 0 0 0 2 0 0 0
25 recommended_9 chr13 103052767 103052889 CpG island in the first intron of the FGF14 gene cg22583065 103052827 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr13%3A103052767-103052889 CTCCCGGCTGCCAGCGTGAGCGGTTCCGGGAAAGGCTGCGCCCAGCCTCCTCGCCAGCGC[CG]CCGCCACCACCATGCAGCCCTCCAGCCTGCCTCCCCTGGGTTGCTCGCCCACAGCTCCGC Island Body FGF14 0.0902 0.738 0.713 0 completed PyroMark CpG 51 10 59 11 26 7 56 8 54 14 34 9 7 7 97 55 7 4 3 5 6 5 95 15 5 6 6 5 94 87 95 91 2 1 1 3 2 3 1 2 1 3 5 2 1 2 1 2 1 1 1 0 3 2 1 4 1 2 0 1 1 2 3 2
26 recommended_10 chr1 161442677 161442799 Degenerate LTR ERV1 repeat element in an intergenic region cg09846895 161442737 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr1%3A161442677-161442799 GGCAGCCAGCAGCGGCAACCGACTCAGTTCCTCTTCTACACTTTGGAAGGTTTGGTTTTT[CG]CTCTATGCAAAAAATCTTGCTGTTCTTCACTCTTTGCATCCGCTGTGCCTTGAAGTCCTG S_Shore 0.0328 0.492 0.552 1 completed PyroMark CpG 35 83 46 59 49 77 54 81 47 77 59 68 97 66 97 56 2 3 8 4 3 16 96 86 87 85 81 84 97 95 98 94 7 3 5 7 4 8 2 2 3 7 4 2 0 2 1 6 1 2 8 2 2 1 1 4 2 2 3 2 1 3 0 1
27 recommended_11 chr21 47784058 47784180 Tandem repeat in the first intron of the PCNT gene cg05931989 47784118 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr21%3A47784058-47784180 CTGAAGCCCCCTGGCCGCAGTGGGACAGCTTTGTGCTCGGACAGGCAGGCTAGCAGTCGC[CG]TCCCGGAGCCCCCTGGCCGCAGTGGGACAGCTTTGTGCTCGGACGGGCAGGCTGGCAGTT Body PCNT 0.0656 0.697 0.542 0 completed PyroMark CpG 91 84 86 88 88 93 89 91 89 85 87 90 89 68 91 65 11 15 7 6 15 16 92 92 94 92 90 90 93 96 91 88 2 8 2 6 7 2 0 5 1 8 5 1 2 4 2 2 5 4 4 1 18 3 2 2 2 5 3 3 1 1 3 3
28 recommended_12 chr2 8597328 8597450 Intergenic CpG island cg09590377 8597388 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr2%3A8597328-8597450 GGGGTAAACGGGCTGGGGCGCGGGGTTAAGGGGCGGGGTGGGGCGGAGGCTGTCTCCCGC[CG]CGCCTGCCTCGGATGAGGGCAGCACCTGCTGGGCCGCTGAACGCCCTCCCCTCTCTCTAC Island 0.0902 0.738 0.675 0 completed PyroMark CpG 5 11 2 8 21 2 16 8 10 3 24 15 97 81 58 39 4 2 2 2 2 18 88 23 19 21 14 18 92 1 87 2 3 5 1 6 3 2 3 1 6 1 3 2 0 10 4 7 1 3 2 0 2 1 2 6 3 4 4 1 5 0 11 0
29 recommended_13 chr20 36013367 36013489 CpG island in an intron of the SRC gene cg23635789 36013427 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr20%3A36013367-36013489 TTCACTCTCCCCACAGGCACACGCTGGGCCACACACACGGCTACACCCCCGCCAGGGACA[CG]CACACATGCGGGGTGGAGGCAGGGTCACAGACACCCGCAGACACATCCCCAACGCAGATG Island Body;Body SRC;SRC 0.0574 0.656 0.562 0 completed PyroMark CpG 68 48 73 44 45 40 64 45 58 42 47 35 43 21 4 4 4 3 3 10 9 19 42 20 16 15 16 18 42 69 45 70 0 2 1 1 5 6 2 6 3 5 2 6 2 1 1 1 1 3 4 6 8 3 5 1 3 2 1 1 5 2 4 1
30 recommended_14 chr17 43339436 43339558 Promoter CpG island of two uncharacterized genes cg03048083 43339496 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr17%3A43339436-43339558 TCCGCCTCCAGTGTGCTCTTTGGCTGAGGGACTGGTGGGCGCTGGAAATATTAGAGGCGC[CG]GTGCCTGTGATGTCGCCGCCTCTGTGACGTCCCCGCCGCGACCCCACAGGCAGGGAGCCG Island Body;TSS200;TSS200 LOC100133991;LOC100133991;C17orf46 0.082 0.672 0.726 0 completed PyroMark CpG 53 3 46 2 27 3 19 2 41 3 26 3 5 3 39 33 1 2 2 2 4 5 95 9 3 3 3 3 96 95 96 96 4 0 2 1 3 1 1 1 3 1 2 2 0 1 2 2 0 1 2 0 1 1 2 1 1 0 1 0 0 3 1 1
31 recommended_15 chr16 85676351 85676473 CpG island in an intron of the GSE1 gene cg26648465 85676411 - http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr16%3A85676351-85676473 GGCCCTGGGGTGGGTCGGGGCCGTGCAGAACAGCGGCTGGGGGAATGCCTGAGCCGAGCT[CG]GCTGGGGAGTCTTTACCTCTCCGGGTGCCCTGCCCTCCCCTTTCCTTCCATGCTCGCTGC Island 5'UTR;Body KIAA0182;KIAA0182 0.0574 0.697 0.474 0 completed PyroMark CpG 88 89 90 77 90 93 64 85 67 91 85 92 99 50 99 49 3 6 29 3 5 13 94 84 75 81 77 78 94 82 95 86 8 4 - - 3 6 - 6 2 8 - 2 2 5 2 4 1 2 2 0 3 2 1 1 2 0 4 2 3 - 5 3
32 recommended_16 chr4 118975443 118975565 First coding exon of the NDST3 gene cg12311175 118975503 + http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg19&position=chr4%3A118975443-118975565 AAATACATTCTCATTATTTATGAGAATATTTTAAAGTATATAAATATGGATTCCTGGAAT[CG]AAGCCTTCTAGATAAATACTGTGTAGAATATGGTGTGGGTGTCATTGGATTCCACAAAAC Body NDST3 0.0082 0.303 0.37 0 completed PyroMark CpG 32 74 34 55 45 76 41 75 44 63 47 65 93 54 96 45 5 5 5 7 4 11 92 65 64 62 65 64 92 2 92 4 1 1 2 2 1 3 1 2 3 3 4 2 2 7 0 3 1 1 1 1 4 1 2 1 3 3 1 1 1 0 0 0