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Optional profiling #41

Merged
merged 11 commits into from
Apr 12, 2022
Merged

Optional profiling #41

merged 11 commits into from
Apr 12, 2022

Commits on Apr 6, 2022

  1. Add optional profiling to stan model compilation 

    If param 'profile' is FALSE, all profiling statements are removed from the stan model code before compilation
Removal of profiling statements in other files in include paths not yet supported
    @adrian-lison
    adrian-lison committed Apr 6, 2022
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Commits on Apr 7, 2022

  1. Add profile param to function signature enw_model

    @adrian-lison
    adrian-lison committed Apr 7, 2022
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  2. Add basic profiling statements to epinowcast.stan

    @adrian-lison
    adrian-lison committed Apr 7, 2022
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  3. Add roxygen2 doc for optional profiling

    @adrian-lison
    adrian-lison committed Apr 7, 2022
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  4. Style

    @seabbs
    seabbs committed Apr 7, 2022
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Commits on Apr 11, 2022

  1. Space after profiling parenthesis

    @adrian-lison
    adrian-lison committed Apr 11, 2022
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  2. Rename profile sections 

    Changed names of the profiling sections. There is always a prefix now that states the corresponding stan block: "transformed", "model", "generated".
Moreover, changed the names of the sections to be more concise and like variables.
    @adrian-lison
    adrian-lison committed Apr 11, 2022
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  3. Add link to profiling by cmdstanr

    @adrian-lison
    adrian-lison committed Apr 11, 2022
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  4. Add profiling statements to generated quantities

    @adrian-lison
    adrian-lison committed Apr 11, 2022
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  5. Update news

    @adrian-lison
    adrian-lison committed Apr 11, 2022
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  6. Update version

    @adrian-lison
    adrian-lison committed Apr 11, 2022
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