Add model search functionality in the CLI

[miquelduranfrigola]

Background

Ersilia models can be browsed on the web. Although we do not have a good interface now, this can be done through an Airtable base. There is no way to search/filter models using the CLI. As of now, the only thing that can be done is: ersilia catalog, which simply prints all models on a table.

Requested feature

We would like to have a search function in the ersilia CLI. For example: ersilia catalog search --text "antimicrobial" or ersilia catalog search --mode "pretrained"

[anamika-yadav99]

Hi @miquelduranfrigola Can I work on this issue?

[martwebber]

Hello @miquelduranfrigola, I would like to contribute to this.

[Riyabelle25]

Hello, I have experience with Software Development for ML tools, and would love to contribute here! I have set up Ersilia and have been going through the codebase. I would like to tackle this issue, can I start working on a PR for the same?

[anamika-yadav99]

Hi @miquelduranfrigola I have looked into the codebase and worked around a little bit. I found that catalog already has --search option

I worked on creating a new cli feature search which searches through the catalog and finds the model with text or mode. It works like this

I'm a little confused with what is expected from this feature. Could you please provide a little bit more detail on this feature

[GemmaTuron]

Hello @anamika-yadav99, @martwebber, @Riyabelle25

Thanks for your enthusiasm. Please, before continuing the work on this issue, refer to issue #36 and answer the questions there.
We also advise applicants to tackle one issue at a time, also leaving the opportunity to others to contribute. @Riyabelle25 and @anamika-yadav99 which issue are you most interested in pursuing? You have shown interest in a number of them.

[anamika-yadav99]

Hi @GemmaTuron I would like to work on this issue #13.

[miquelduranfrigola]

Thanks @anamika-yadav99! Thanks, and apologies for a confusing issue description.
The simplest will be to do the following:
ersilia catalog --text 'antimalarial'
and
ersilia catalog --mode 'pretrained'

[dauinh]

Hi @miquelduranfrigola, can I be assigned to work on this issue?

[miquelduranfrigola]

Hi @miquelduranfrigola, can I be assigned to work on this issue?

Hi @dauinh this issue has been solved and I am closing it now. Thanks for your interest!