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Outreachy Code Project: Name: Anamika Yadav #92
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@anamika-yadav99 Is this the format that issue is meant to have going forward? |
Hi @anamika-yadav99 |
@GemmaTuron I have completed most of these tasks. Can I do it after a couple of days? I have my exams going on currently. |
Select one issue related to improving the CLI and request to be assigned to it. I was assigned issue #13 I have completed the task and the issue was closed. |
Suggest at least one missing feature in the CLI
|
Link in the comments any other PR you have contributed to.
Raised PR for the same.
3. Improved ModelSearcher functionality as discussed in issue #241
Raised a PR #262 |
Hi @anamika-yadav99 thanks for documenting all of this so nicely |
Add a screenshot showing that you are able to run predictions using ersilia as a Python library (find more information here). Ideally, use a Jupyter notebook. |
Hi @anamika-yadav99 , you have done a great job over all. I really like your approach in solving issue #13 add model search functionality in CLI . Well done! |
Thanks @Amna-28 . You did an amazing job with the streamlit app yourself. The app looks great! |
Search the scientific literature and suggest 3 new models (comment in this issue) that would be relevant to incorporate in the Hub. DeepDTA: deep drug–target binding affinity prediction: AtomNet: A Deep Convolutional Neural Network for Bioactivity Prediction in Structure-based Drug Discovery: ChemBO: Bayesian Optimization of Small Organic Molecules with Synthesizable Recommendations: DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations |
Write a docstring for the ErsiliaModel class. Use the Google Python Style guide.@GemmaTuron Will this be all or should I also write for the methods in ErsiliaModel Class? |
Hi @anamika-yadav99, I think that your CLI feature suggestion is a really nice idea |
Thank you so much @anamika-yadav99 |
Create a simple Streamlit app using the ersilia Python library. The app can have an input and an output box, and perhaps a few models to select. Add a screenshot of the app as seen in your browser. |
Comment under this issue explaining why you are interested in this project. I’m a 3rd year undergraduate student from New Delhi, India. I’m currently pursuing engineering from GGS Indraprastha University, New Delhi. I’m a big supporter of open science and open source. I’m intrigued by the support and opportunities open source could provide to the scientific community and people. I have always wanted to work on projects which build tools for the scientific research community. It’s one of the driving forces to pursue this project. None the less, this project is aimed for developing country. |
Applicant: https://github.com/anamika-yadav99
Welcome to the Ersilia Open Source Initiative. This issue will serve to track all your contributions for the project “Improve the Ersilia Model Hub, a FOSS platform offering pre-trained AI/ML models for research”.
Please tick the tasks as you complete them. To make a final application it is not required to have completed all tasks. This project requires knowledge of the Python programming language. The tasks are not ordered from more to less important, they are simply related to different skills. Start where you feel most comfortable.
Initial steps
Installation of the Ersilia Model Hub
ersilia
library.ersilia catalog
command. Add a screenshot of the local catalog (ersilia catalog –local
)CLI
Python library
ersilia
as a Python library (find more information here). Ideally, use a Jupyter notebook.ersilia
Python library. The app can have an input and an output box, and perhaps a few models to select. Add a screenshot of the app as seen in your browser.Scientific content
Other
If you have interest in working on related topics, or have new suggestions, please do the following
Community
Final application
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