fixes bug when sos_thr > 0 in spoverlap get_my_evol_events . Fixes #404

etetoolkit · May 25, 2019 · b345501 · b345501
1 parent 6f3d59c
commit b345501
Showing 1 changed file with 1 addition and 3 deletions.
diff --git a/ete3/phylo/spoverlap.py b/ete3/phylo/spoverlap.py
@@ -129,15 +129,13 @@ def get_evol_events_from_leaf(node, sos_thr=0.0):
             all_events.append(event)
 
         # If NO species overlap: speciation
-        elif score == sos_thr:
+        elif score <= sos_thr:
             event.node = current.up
             event.etype = "S"
             event.orthologs = set([n.name for n in sister_leaves if n.species != ref_spcs])
             event.outparalogs = set([])
             current.up.add_feature("evoltype","S")
             all_events.append(event)
-        else:
-            pass # do not add event if distances == 0
 
         # Updates browsed species
         browsed_spcs   |= sister_spcs