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Scheduled jobs #23

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AGirin opened this issue Sep 26, 2016 · 54 comments
Closed

Scheduled jobs #23

AGirin opened this issue Sep 26, 2016 · 54 comments

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@AGirin
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AGirin commented Sep 26, 2016

Hi,

It looks like jobs are not running on my system:

[411]$ /var/www/411/bin/cron.php && /var/www/411/bin/worker.php
[+] Scheduler: 1474926082
[+] Maintenance
[+] Search Health
[+] Rollups
[+] Searches
[+] Reports
[+] Summary
[+] Autoclose
[+] Cleanup
[+] Worker
[+] Worker: 1474926093
[+] Job count: 64
PHP Fatal error: Uncaught PDOException: SQLSTATE[HY000]: General error: 1 near "LIMIT": syntax error in /var/www/411/phplib/DB.php:78
Stack trace:
#0 /var/www/411/phplib/DB.php(78): PDO->prepare('UPDATE jobs S...')
#1 /var/www/411/phplib/Job.php(167): FOO\DB::query('UPDATE jobs S...', Array, 0)
#2 /var/www/411/phplib/Worker.php(77): FOO\JobFinder::getAndLock('1', 1474926093)
#3 /var/www/411/bin/worker.php(34): FOO\Worker->processSite(Object(FOO\Site), 1474926093)
#4 {main}

thrown in /var/www/411/phplib/DB.php on line 78
err [411_Worker] Worker error site:[1] ret:[65280]

And I see this in the web UI:

image

Any ideas on why this is happening?

Thanks!

Andrew

@kiwiz
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kiwiz commented Sep 26, 2016

Some quick things to check:

  • Are you running the newest version of the code?
  • Can you try running bin/migration.php and seeing if that fixes it?

@AGirin
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AGirin commented Sep 26, 2016

I ran bin/migration.php - no luck.

And I pull from github this morning so I assume I use the latest code.

@kiwiz
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kiwiz commented Sep 26, 2016

Can you add Logger::info($query, $params, "TEST"); to DB.php:97 and paste the the log line here?

@AGirin
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AGirin commented Sep 26, 2016

Added like this:

    Logger::info($query, $params, "TEST");
    if(!$stmt->execute()) {
        throw new DBException('Query failed: ' . $stmt->errorInfo()[2]);
    }

Where do I find the log line?

@kiwiz
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kiwiz commented Sep 26, 2016

It should be in PHP's errorlog (possibly /var/log/httpd/error.log).

@AGirin
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AGirin commented Sep 26, 2016

Looks like I am getting the same errors as on the console:

[26-Sep-2016 22:25:10 UTC] PHP Fatal error: Uncaught PDOException: SQLSTATE[HY000]: General error: 1 near "LIMIT": syntax error in /var/www/411/phplib/DB.php:78
Stack trace:
#0 /var/www/411/phplib/DB.php(78): PDO->prepare('UPDATE jobs S...')
#1 /var/www/411/phplib/Job.php(167): FOO\DB::query('UPDATE jobs S...', Array, 0)
#2 /var/www/411/phplib/Worker.php(77): FOO\JobFinder::getAndLock('1', 1474928710)
#3 /var/www/411/bin/worker.php(34): FOO\Worker->processSite(Object(FOO\Site), 1474928710)
#4 {main}
thrown in /var/www/411/phplib/DB.php on line 78
[26-Sep-2016 22:25:10 UTC] err [411_Worker] Worker error site:[1] ret:[65280]

@kiwiz
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kiwiz commented Sep 26, 2016

Do you see a log line with the string "TEST" in it? It should be right before the error.

@AGirin
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AGirin commented Sep 27, 2016

I found that log:

[Tue Sep 27 09:26:44 2016] [error] [client xxx.xxx.xxx.xxx] info [TEST] SELECT value FROM config WHERE site_id = ? AND key = ? 0:[1] 1:[cookie_secret], referer: http://test.test.net/alerts?query=state:(0+1)

I am running sqlite-3.6.20-1.el6_7.2 - could that be an issue?

@AGirin
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AGirin commented Sep 27, 2016

Not sure if this is related but I see strange timestamps:

image

@kiwiz
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kiwiz commented Sep 28, 2016

The timestamps are just because the jobs haven't run yet (Jan 1, 1970 == 0)

The log line you're looking for should have "UPDATEjobsSETstate= ? somewhere in it.

@AGirin
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AGirin commented Sep 28, 2016

I cannot find a way to output this log line. Do I need to do something different? I rebuilt the site many times, tried different options - no luck. Same error all the time. I mentioned this during install:

Please note that,
select2-bootstrap3-css#1.4.6 depends on select2#^3.3.2 which resolved to select2#3.5.4
FourOneOne depends on select2#~4.0.0 which resolved to select2#4.0.3
Resort to using select2#^3.3.2 which resolved to select2#3.5.4
Code incompatibilities may occur.

Could that be related to the issue I see?

@AGirin
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AGirin commented Sep 28, 2016

Ok, I got this:

earray(4)

{
[0]=>
array(6) {
["file"]=>
string(26) "/var/www/411/phplib/DB.php"
["line"]=>
int(81)
["function"]=>
string(7) "prepare"
["class"]=>
string(3) "PDO"
["type"]=>
string(2) "->"
["args"]=>
array(1) {
[0]=>
string(196) "UPDATE jobs SET state = ?, update_date = ?, tries = tries + 1, completion = 0, last_execution_date = ? WHERE site_id = ? AND archived = 0 AND state = ? AND job_id = ? LIMIT 1"
}
}
[1]=>
array(6) {
["file"]=>
string(27) "/var/www/411/phplib/Job.php"
["line"]=>
int(169)
["function"]=>
string(5) "query"
["class"]=>
string(6) "FOO\DB"
["type"]=>
string(2) "::"
["args"]=>
array(3) {
[0]=>
string(196) "UPDATE jobs SET state = ?, update_date = ?, tries = tries + 1, completion = 0, last_execution_date = ? WHERE site_id = ? AND archived = 0 AND state = ? AND job_id = ? LIMIT 1"
[1]=>
array(6) {
[0]=>
int(4)
[1]=>
int(1475094709)
[2]=>
int(1475094709)
[3]=>
int(1)
[4]=>
int(0)
[5]=>
string(1) "1"
}
[2]=>
int(0)
}
}
[2]=>
array(6) {
["file"]=>
string(30) "/var/www/411/phplib/Worker.php"
["line"]=>
int(78)
["function"]=>
string(10) "getAndLock"
["class"]=>
string(13) "FOO\JobFinder"
["type"]=>
string(2) "::"
["args"]=>
array(2) {
[0]=>
string(1) "1"
[1]=>
int(1475094709)
}
}
[3]=>
array(6) {
["file"]=>
string(27) "/var/www/411/bin/worker.php"
["line"]=>
int(35)
["function"]=>
string(11) "processSite"
["class"]=>
string(10) "FOO\Worker"
["type"]=>
string(2) "->"
["args"]=>
array(2) {
[0]=>
object(FOO\Site)#8 (4) {
["obj":protected]=>
array(6) {
["site_id"]=>
int(1)
["name"]=>
string(7) "411"
["host"]=>
string(28) "Hostname"
["archived"]=>
bool(false)
["create_date"]=>
int(1475089719)
["update_date"]=>
int(1475089719)
}
["new":protected]=>
bool(false)
["dirty":protected]=>
bool(false)
["initial_update_date":protected]=>
int(1475089719)
}
[1]=>
int(1475094709)
}
}
}

@kiwiz
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kiwiz commented Sep 28, 2016

Maybe it is a sqlite issue. I ran that query locally and it works fine. Could you try updating your copy of sqlite3?

@AGirin
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AGirin commented Sep 28, 2016

What version do you run? Mine is sqlite-3.6.20-1.el6_7.2 - I think this is most recent one.

@kiwiz
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kiwiz commented Sep 28, 2016

I'm running 3.8.2 here.

@AGirin
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AGirin commented Sep 28, 2016

Let me try getting this one and see if this fixes the issue.

@AGirin
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AGirin commented Sep 28, 2016

Installed sqlite-3.8.8.1; downgraded php from 7.0 to 5.6. Still the same error. Not sure what I am doing wrong.

@AGirin
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AGirin commented Sep 28, 2016

Ran this in SQLite3 and got the same error:

sqlite> UPDATE jobs SET state = ?, update_date = ?, tries = tries + 1, completion = 0, last_execution_date = ? WHERE site_id = ? AND archived = 0 AND state = ? AND job_id = ? LIMIT 1;
Error: near "LIMIT": syntax error

@kiwiz
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kiwiz commented Sep 29, 2016

That's a parameterized query, so that makes sense. Can you try this query? UPDATE jobs SET state = 0, update_date = 0, tries = tries + 1, completion = 0, last_execution_date = 0 WHERE site_id = 0 AND archived = 0 AND state = 0 AND job_id = 0 LIMIT 1;

@AGirin
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AGirin commented Sep 29, 2016

Same error:

sqlite> UPDATE jobs SET state = 0, update_date = 0, tries = tries + 1, completion = 0, last_execution_date = 0 WHERE site_id = 0 AND archived = 0 AND state = 0 AND job_id = 0 LIMIT 1;
Error: near "LIMIT": syntax error
sqlite>

@erikmathis
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sqlite> UPDATE jobs SET state = 0, update_date = 0, tries = tries + 1,
completion = 0, last_execution_date = 0 WHERE site_id = 0 AND archived =
0 AND state = 0 AND job_id = 0 LIMIT 1;
Error: near "LIMIT": syntax error
sqlite> UPDATE jobs SET state = 0, update_date = 0, tries = tries + 1,
completion = 0, last_execution_date = 0 WHERE site_id = 0 AND archived =
0 AND state = 0 AND job_id = 0;
sqlite>

I've never tried, but can you use a limit on an update?

-Erik-

On 09/29/2016 10:41 AM, AGirin wrote:

Same error:

sqlite> UPDATE jobs SET state = 0, update_date = 0, tries = tries + 1,
completion = 0, last_execution_date = 0 WHERE site_id = 0 AND archived
= 0 AND state = 0 AND job_id = 0 LIMIT 1;
Error: near "LIMIT": syntax error
sqlite>


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@AGirin
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AGirin commented Sep 29, 2016

I confirm that removing LIMIT does work but I am not sure why the code works for everybody else? I cannot find an issue on my side so far.

@AGirin
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AGirin commented Sep 29, 2016

Looks like UPDATE should work with LIMIT: https://www.sqlite.org/lang_update.html

@kiwiz
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kiwiz commented Sep 30, 2016

I'm at a loss. Running that query on my box definitely works.

@AGirin
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AGirin commented Sep 30, 2016

This might answer this:
http://sqlite.org/compile.html#enable_update_delete_limit

Basically my SQLite does not have SQLITE_ENABLE_UPDATE_DELETE_LIMIT enabled.

From the page above:

SQLITE_ENABLE_UPDATE_DELETE_LIMIT
This option enables an optional ORDER BY and LIMIT clause on UPDATE and DELETE statements.

If this option is defined, then it must also be defined when using the 'lemon' tool to generate a parse.c file. Because of this, this option may only be used when the library is built from source, not from the amalgamation or from the collection of pre-packaged C files provided for non-Unix like platforms on the website.

I am using rpm that I found online (tried different ones with no luck). Where did you get yours? Or did you build it yourself?

@AGirin
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AGirin commented Sep 30, 2016

Apparently it is a very complicated process to build sqlite3 with that option enabled. I tried this:

http://stackoverflow.com/questions/1824490/how-do-you-enable-limit-for-delete-in-sqlite

And it worked but... Still LIMIT does not work. I think there at ea bunch of libraires you need to recompile to make this work. Everybody suggest not to use LIMIT with UPDATE statement and use SELECT with LIMIT (UPDATE (SELECT ... LIMIT 1)).

Any suggestion on what I can try changing the query to in order to see if the code works?

@kiwiz
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kiwiz commented Oct 1, 2016

Is mysql an option? We actually use 411 with that internally, but released the project with sqlite because it's usually easier to set up. db.sql will require a few tweaks and you'll need to make some changes to config.php to point to mysql instead. I can provide more details as necessary.

@AGirin
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AGirin commented Oct 3, 2016

Thanks @kiwiz. Could you provide this info? I might be able to work with it.

@kiwiz
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kiwiz commented Oct 3, 2016

I pushed a db_mysql.sql file with the schema. For config.php you'll need to change the dsn to something like "mysql:host=localhost;dbname=testdb".

@AGirin
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AGirin commented Oct 3, 2016

Thanks. I started on a new host and now I am getting this (I am using mysql):

bin/create_site.php
Creating new site
Site name: 411
Hostname: hostname.test.com
PHP Fatal error: Uncaught exception 'PDOException' with message 'SQLSTATE[23000]: Integrity constraint violation: 1048 Column 'site_id' cannot be null' in /var/www/411/phplib/DB.php:97
Stack trace:
#0 /var/www/411/phplib/DB.php(97): PDOStatement->execute()
#1 /var/www/411/phplib/Model.php(140): FOO\DB::query('INSERT INTO `si...', Array, 0)
#2 /var/www/411/phplib/Model.php(116): FOO\Model->create()
#3 /var/www/411/bin/create_site.php(14): FOO\Model->store()
#4 {main}
thrown in /var/www/411/phplib/DB.php on line 97

@kiwiz
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kiwiz commented Oct 3, 2016

Should be fixed via 5c259b2.

@AGirin
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AGirin commented Oct 3, 2016

It is! Thanks! But now this (we are getting there!):

bin/create_user.php
Creating new user
Username: admin
Real name: Admin
Password: Test
Email: test@test.com
Admin (y/n): y
PHP Fatal error: Uncaught exception 'PDOException' with message 'SQLSTATE[42S22]: Column not found: 1054 Unknown column 'name' in 'field list'' in /var/www/411/phplib/DB.php:97
Stack trace:
#0 /var/www/411/phplib/DB.php(97): PDOStatement->execute()
#1 /var/www/411/phplib/Model.php(140): FOO\DB::query('INSERT INTO `us...', Array, 0)
#2 /var/www/411/phplib/Model.php(116): FOO\Model->create()
#3 /var/www/411/bin/create_user.php(31): FOO\Model->store()
#4 {main}
thrown in /var/www/411/phplib/DB.php on line 97

@kiwiz
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kiwiz commented Oct 3, 2016

Opps, we were missing a few fields in the schema. Pull + apply one more time. 🎱

@AGirin
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AGirin commented Oct 3, 2016

Did that and it is fixed. Thanks again! Now I am getting this error when I login to site:

except [NONE] PDOException: "SQLSTATE[42000]: Syntax error or access violation: 1064 You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near ' "unixepoch") as date, action, COUNT(*) as count FROM alert_logs INNER J' at line 1" at [/var/www/411/phplib/DB.php:97] 0:[PDOStatement->execute() called at [/var/www/411/phplib/DB.php:97]] 1:[FOO\DB::query() called at [/var/www/411/phplib/REST/Dashboard.php:59]] 2:[FOO\Dashboard_REST->GET() called at [/var/www/411/phplib/REST.php:107]] 3:[FOO\REST->route() called at [/var/www/411/htdocs/api/dashboard.php:6]], referer: http://test.test.com/

@AGirin
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AGirin commented Oct 3, 2016

Also - tried creating new search (ping) and got this:

PDOException: "SQLSTATE[42S02]: Base table or view not found: 1146 Table '411.search_filters' doesn't exist" at [/var/www/411/phplib/DB.php:97] 0:[PDOStatement->execute() called at [/var/www/411/phplib/DB.php:97]] 1:[FOO\DB::query() called at [/var/www/411/phplib/Model.php:494]] 2:[FOO\ModelFinder::getByQuery() called at [/var/www/411/phplib/Element.php:134]] 3:[FOO\ElementFinder::getBySearch() called at [/var/www/411/phplib/Search.php:358]] 4:[FOO\Search->getFilters() called at [/var/www/411/phplib/Job/Search.php:66]] 5:[FOO\Search_Job->_run() called at [/var/www/411/phplib/REST/Searches.php:158]] 6:[FOO\Searches_REST->test() called at [/var/www/411/phplib/REST/Searches.php:58]] 7:[FOO\Searches_REST->POST() called at [/var/www/411/phplib/REST.php:108]] 8:[FOO\REST->route() called at [/var/www/411/htdocs/api/searches.php:6]], referer: http://test.test.com/searches/new?type=ping

@kiwiz
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kiwiz commented Oct 3, 2016

Hmm, that's an incompatibility between MySQL and SQLite. Can you create a new ticket for just this issue? The rest of 411 should work fine otherwise. (This only affect the dashboard, afaik).

@AGirin
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AGirin commented Oct 3, 2016

Sorry - are you referring to the first error?

except [NONE] PDOException: "SQLSTATE[42000]: Syntax error or access violation: 1064 You have an error in your SQL syntax; check the manual that corresponds to your MySQL server version for the right syntax to use near ' "unixepoch") as date, action, COUNT(*) as count FROM alert_logs INNER J' at line 1" at [/var/www/411/phplib/DB.php:97] 0:[PDOStatement->execute() called at [/var/www/411/phplib/DB.php:97]] 1:[FOO\DB::query() called at [/var/www/411/phplib/REST/Dashboard.php:59]] 2:[FOO\Dashboard_REST->GET() called at [/var/www/411/phplib/REST.php:107]] 3:[FOO\REST->route() called at [/var/www/411/htdocs/api/dashboard.php:6]], referer: http://test.test.com/

@kiwiz
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kiwiz commented Oct 3, 2016

Yup.

@AGirin
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AGirin commented Oct 3, 2016

What about the second one?

PDOException: "SQLSTATE[42S02]: Base table or view not found: 1146 Table '411.search_filters' doesn't exist" at [/var/www/411/phplib/DB.php:97] 0:[PDOStatement->execute() called at [/var/www/411/phplib/DB.php:97]] 1:[FOO\DB::query() called at [/var/www/411/phplib/Model.php:494]] 2:[FOO\ModelFinder::getByQuery() called at [/var/www/411/phplib/Element.php:134]] 3:[FOO\ElementFinder::getBySearch() called at [/var/www/411/phplib/Search.php:358]] 4:[FOO\Search->getFilters() called at [/var/www/411/phplib/Job/Search.php:66]] 5:[FOO\Search_Job->_run() called at [/var/www/411/phplib/REST/Searches.php:158]] 6:[FOO\Searches_REST->test() called at [/var/www/411/phplib/REST/Searches.php:58]] 7:[FOO\Searches_REST->POST() called at [/var/www/411/phplib/REST.php:108]] 8:[FOO\REST->route() called at [/var/www/411/htdocs/api/searches.php:6]], referer: http://test.test.com/searches/new?type=ping

@AGirin
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AGirin commented Oct 3, 2016

#37 --> for the first error.

@kiwiz
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kiwiz commented Oct 3, 2016

Another schema change. (Sorry, the schema we were using for MySQL was slightly different)

@AGirin
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AGirin commented Oct 3, 2016

Almost there I think. New error now:
except [NONE] PDOException: "SQLSTATE[42S02]: Base table or view not found: 1146 Table '411.search_logs' doesn't exist" at [/var/www/411/phplib/DB.php:97]

@kiwiz
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kiwiz commented Oct 3, 2016

Hopefully the last one.

@AGirin
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AGirin commented Oct 3, 2016

Ok, this works! I was able to schedule new job but now this:

/var/www/411/bin/cron.php
[+] Scheduler: 1475528923
[+] Maintenance
PHP Fatal error: Uncaught exception 'PDOException' with message 'SQLSTATE[HY000]: General error' in /var/www/411/phplib/DB.php:118
Stack trace:
#0 /var/www/411/phplib/DB.php(118): PDOStatement->fetchAll(2)
#1 /var/www/411/phplib/Element.php(146): FOO\DB::query('UPDATE `search_...', Array)
#2 /var/www/411/phplib/Scheduler.php(318): FOO\ElementFinder::reap(1475528923)
#3 /var/www/411/phplib/Scheduler.php(142): FOO\Scheduler->maintenance(1475528923)
#4 /var/www/411/bin/cron.php(45): FOO\Scheduler->processSite(Object(FOO\Site), 1475528923, false)
#5 {main}
thrown in /var/www/411/phplib/DB.php on line 118
err [411_Scheduler] Scheduler error site:[1] ret:[65280]

@AGirin
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AGirin commented Oct 3, 2016

Sorry - one more (now with Logstash search):

PHP Fatal error: Call to undefined function ESQuery\mb_regex_encoding() in /var/www/411/vendor/kiwiz/esquery/src/Parser.php on line 3796, referer: http://test.test.com/searches/new?type=logstash

@kiwiz
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kiwiz commented Oct 3, 2016

Do you have mbstring enabled?

@kiwiz
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kiwiz commented Oct 3, 2016

The DB error is pretty vague. Can you grab the query actually being sent to the db?

@AGirin
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AGirin commented Oct 3, 2016

So Logstash was fixed by installing php-mbstring (missed it somehow).

As far as /var/www/411/bin/cron.php - let me try to get the full string for you.

@AGirin
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AGirin commented Oct 3, 2016

One more error unfortunately: When I click on Feed under Alerts tab I get:

except [NONE] PDOException: "SQLSTATE[42S02]: Base table or view not found: 1146 Table '411.alert_logs' doesn't exist" at [/var/www/411/phplib/DB.php:97] 0:[PDOStatement->execute() called at [/var/www/411/phplib/DB.php:97]] 1:[FOO\DB::query() called at [/var/www/411/phplib/Model.php:494]] 2:[FOO\ModelFinder::getByQuery() called at [/var/www/411/phplib/REST/Models.php:120]] 3:[FOO\Models_REST->read() called at [/var/www/411/phplib/REST/Models.php:279]] 4:[FOO\Models_REST->GET() called at [/var/www/411/phplib/REST.php:107]] 5:[FOO\REST->route() called at [/var/www/411/htdocs/api/alertlogs.php:6]],

Plus with Logstash now I see this (it supposed to create alert and I think it is failing since there is not table with this name):

image

@AGirin
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AGirin commented Oct 3, 2016

I fixed alert_logs error by rename table alertlogs to alert_logs. Could you fix I it in MySQL script?

@kiwiz
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kiwiz commented Oct 3, 2016

Remaining ones should be fixed.

@AGirin
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AGirin commented Oct 4, 2016

Got full output of the error when I run /var/www/411/bin/cron.php. Does this help?

array(5) {
[0]=>
array(6) {
["file"]=>
string(26) "/var/www/411/phplib/DB.php"
["line"]=>
int(118)
["function"]=>
string(8) "fetchAll"
["class"]=>
string(12) "PDOStatement"
["type"]=>
string(2) "->"
["args"]=>
array(1) {
[0]=>
int(2)
}
}
[1]=>
array(6) {
["file"]=>
string(31) "/var/www/411/phplib/Element.php"
["line"]=>
int(146)
["function"]=>
string(5) "query"
["class"]=>
string(6) "FOO\DB"
["type"]=>
string(2) "::"
["args"]=>
array(2) {
[0]=>
string(147) "UPDATE search_filters SET archived = 1 WHERE site_id = ? AND archived = 0 AND lifetime > 0 AND ? >= (create_date + lifetime * 60 - 5)"
[1]=>
array(2) {
[0]=>
int(1)
[1]=>
int(1475596920)
}
}
}
[2]=>
array(6) {
["file"]=>
string(33) "/var/www/411/phplib/Scheduler.php"
["line"]=>
int(318)
["function"]=>
string(4) "reap"
["class"]=>
string(17) "FOO\ElementFinder"
["type"]=>
string(2) "::"
["args"]=>
array(1) {
[0]=>
int(1475596920)
}
}
[3]=>
array(6) {
["file"]=>
string(33) "/var/www/411/phplib/Scheduler.php"
["line"]=>
int(142)
["function"]=>
string(11) "maintenance"
["class"]=>
string(13) "FOO\Scheduler"
["type"]=>
string(2) "->"
["args"]=>
array(1) {
[0]=>
int(1475596920)
}
}

@kiwiz
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kiwiz commented Oct 4, 2016

@AGirin Might be fixed via #41.

@AGirin
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AGirin commented Oct 5, 2016

I confirm. This is fixed! Thanks a lot for all the help. I am closing the ticket.

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