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SLPA_ce20180525c.ipf
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SLPA_ce20180525c.ipf
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#pragma rtGlobals=3 // Use modern global access method and strict wave access.
/////////////////////////////////////
//////////CHANGE LOG/////////////////
////////////////////////////////////
// SLPA ver. ce20180525c.ipf [MAJOR UPDATE]
// - [IXPS] Add Manual Isochromaticity Correction (IXPS_ManCorr) from file IXPS_ManCorr ver ce20180525d.ipf
// - Display manual correction for selected map (UMap). Have Sliders and SetVars for map correction.
// - Auto fit possible
// - Load from and save to preset
// - Export and import preset files
// - Adjustable slider ranges (for rough/fine adjustment)
// - New Ref point where the UMap and CMap will keep the same value
// - Offset/Scaling/Rotation correction have been moved to ManCorr panel
// - Color scale range is imported from the main ImgXPS panel (From ParamW). It can be adjusted here and the new setting is updated back to the main ImgXPS panel.
// - Notes for describing presets
// - Tidy up the panel
//SLPA ver. ce20180505a.ipf
// - [IXPS] - IXPS2 -Re-write the peak fitting part.
// - Can now fit arbitrary number of peaks (XPS only).
// - Now fitting can use different types of background (None, flat,slope, ERF, atan, Shirley and linear)
// - After fitting, the program can also show individual components and BG used during the extraction.
//SLPA ver. ce20180418e.ipf
// - [IXPS] - Bug fix: Copy minX,maxX,minY,maxY when the ROI is adopted from another scan
//SLPA ver. ce20180418d.ipf
// - [IXPS] - Display dashed line to show where on the z-profile the frame is currently on
//SLPA ver. ce20180418c.ipf
// - [IXPS] - Now the loaded data and processed images are kept in DispXPS folder instead of root folder to prevent clusters.
//SLPA ver. ce20180418b.ipf
// - [IXPS] - Bugfix: Auto color scale and the color slider limits.
//SLPA ver. ce20180418a.ipf
// - [IXPS] - Bugfix: Find minX,maxX,minY,maxY when the ROI is manually drawn
//SLPA ver. ce20180417c.ipf
// - [IXPS] - Check whether user enter FOV during the load scan.
//SLPA ver. ce20180417b.ipf
// - [DXPS] - Remove dependencies of Cmbnd and CmbndBE waves before data deletion to prevent delete errors.
//SLPA ver. ce20180409b.ipf
// - [UTIL] - Add OBJ vs STV panel in Utility Belt (find parameter for IXPS scans)
// - [UTIL] - Modify colour scale adjust panel in Utility Belt (can now change color table 'ctab' and set/apply default setting.
// - [UTIL] - Adjust z value for image wave (to offset and equalize BG for e.g. parameter map comparisons)
//SLPA ver. ce20180405a.ipf
// - [DXPS] - Bugfixes - Select and enable all parameter input after loading new data.
// - [DXPS] - Automatically generate result after 'Copy Dispersion from'
// - [UTIL] - Bugfixes - prevent error when a non-graph window is active.
//SLPA ver. ce20180404b.ipf
// - [IXPS] - Isochromaticity [SLP_IXPS_GenIsochrome]: Change from using 2D paraboloid to 'Rosenbrock's Banana Function' to better represent the isochromaticity of the PEEM's optics.
//SLPA ver. ce20180402b.ipf
// - [UTIL] - Add Color scale adjust panel
//SLPA ver. ce20180402a.ipf
// - [UTIL] - Add Launcher panel (under Util section)
//SLPA ver. ce20180319a.ipf
// - [MGFit] - Add multi-GLA peak fitting program (MGFit modules)
//Function
// - Slider
// - BG subtraction
// - Peak select
// - Copy Guess values
// - Default constraint
// - use default constraint and edit
// - Peak library and import peak library from a .txt file
// - Colour changes /w hold or guess out of range
// - Save/Load guesses
// - Fit and show fit results
// - Display last fit result
// - BG adjust and record
// - Export fit results
// - Check for duplicated new data W name
// - Allow user to change data W name
// - Peak area report
// - Fine steps for guess coef. adjustment
// - Display 'Kn' for each parameter
// - Arbitrary constraints
// - Default constraint for all peaks
//TODOs
// - Font too big for Window Igor - Need to increase the panel size
//SLPA ver. ce20180222a.ipf
// - [UTIL] Bug fix: SLP_Util_ShirleyGen to be able to create Shirley BG for both positive and negative dE.
//SLPA ver. ce20180221a.ipf
// - [DXPS] SLP_DXPS_Convert4PCA() - convert Map Volume Wave into a table to be used for PCA analysis software
//SLPA ver. ce20180219a.ipf
// - [UTIL] SLP_Util_Split2D() to split 2D wave (e.g. TRXPS scan) into multiple 1D waves
// - [UTIL] SLP_Util_NormalizeMultiWaves()
//SLPA ver. ce20180212a.ipf
// - [UTIL] add SLP_Util_ShirleyGen to generate Shirley BG and subtract the BG (for XPS)
//SLPA ver. ce20180201a.ipf
// - [DXPS] Ask users for photon energy (hv) when loading the scan.
//SLPA ver. ce20180131b.ipf
// - [DXPS] Bug fixes on the BE/STV swap for Merged spectrum after changing Disp. Factor or (x0,y0)
// - [DXPS] Change default values
//SLPA ver. ce20180131a.ipf
// - [DXPS] Bug fixes on the overwriting exported waves.
//SLPA ver. ce20180130b.ipf
// - [DXPS] Initialize the selected dispersive line (vertical line in the middle)
//SLPA ver. ce20180130a.ipf
// - [DXPS] Ask whether user wants to overwrite the wave when exporting the plot
//SLPA ver. ce20180116a.ipf
// - [DXPS] Check whether the selected scan name is duplicated or not.
//SLPA ver. ce20171227a.ipf
// - [DXPS] Bug fix - Newly loaded scan is selected after the load finish.
//SLPA ver. ce20171030a.ipf
// - [DXPS] Bug fix - add the auto detection of STV start, STV step from .txt file in the DXPS scan.
//SLPA ver. ce20170920a.ipf
// - [IXPS] Bug fix - Extract LEEM Cutoff - previously MapVol size is only 1 layer and only collect the first parameter. Corrected now.
//SLPA ver. ce20170906d.ipf
// - [LL] Note field is now editable. Can make note for individual image
//SLPA ver. ce20170906c.ipf
// - [Util] Ask user to find SLP_Auger_W.ibw or SLP_BE_W.ibw if they have not been loaded to the current Igor folder.
//SLPA ver. ce20170906b.ipf
// - [DXPS] Add Auger data to peak assignment
// - [IXPS] Add Auger data to peak assignment
//SLPA ver. ce20170906a.ipf
// - [LL] Bug fix - Display preview image once the 'Preview' checkbox is clicked [ListBoxProx_LL_FileList]
//SLPA ver. ce20170904a.ipf
// - [DXPS] Bug fix - Peak assignment hook function.
//SLPA ver. ce20170816b.ipf
// - [IXPS] Draw ROI manually instead of using auto- screen mask creation
//SLPA ver. ce20170816a.ipf
// - [DXPS] SLP_DXPS_RestoreRawData - If the raw data has been moved, ask user to browse for it.
//SLPA ver. ce20170815b.ipf
// - [DXPS] Peak assignment function.
//SLPA ver. ce20170815a.ipf
// - [DXPS] BE/KE display for the combined spectrum. Export to BE or KE. Prompt for analyzer's WF if no input.
//SLPA ver. ce20170728a.ipf
// - [IXPS] Fix small bugs on peak assignment/BE display function (initialize new scans)
// - [IXPS] Warn when users try to use existing volume names (incl. names used by other SLP functions) during Load Scan..
//SLPA ver. ce20170713a.ipf
// - [IXPS] Peak assignment (using BE table)
//SLPA ver. ce20170707c.ipf
// - [IXPS] Export and plot z-profile (both KE and BE)
//SLPA ver. ce20170707a.ipf
// - [IXPS] Save z-profile cursor positions for each scan
// - [IXPS] Able to switch KE<->BE scale
//SLPA ver. ce20170707a.ipf
// - [IXPS] Bug fix - Delete all scans = ok (previously didn't actually delete raw data..)
//SLPA ver. ce20170706c.ipf
// - [IXPS] Automatically detect STV start, STV step when loading IXPS,DXPS,LEEDIV,LEEMIV
//SLPA ver. ce20170706b.ipf
// - [DLA] Bug fix - Don't display anything if there is no image loaded yet
// - [UTIL] LoadMultImg2Vol can now load either .tif and .TIFF for
// - [IXPS] Bug fix - Error when 'See z-profile' is checked when loading new volume.
//SLPA ver. ce20170706a.ipf
// - [DLA] Include Diffusion Limit Aggregation analysis (SLP_DLA_ce20170504d.ipf)
//SLPA ver. ce20170629a.ipf
// - [IXPS] Can use cursor to see different z-profile in different area. First use of 'hook' function in Igor.
//SLPA ver. ce20170627a.ipf
// - [IXPS] Add 'LEEM cut-off' mapping (for rel. WF measurement with LEEM).
//SLPA ver. ce20170607a.ipf
// - [IXPS] Can now adjust Isochromaticity mathematical function (displayed in SetVar controls)
//SLPA ver. ce20170606d.ipf
// - [IXPS] Use Inversed GLA instead (for KE scale)
//SLPA ver. ce20170606c.ipf
// - [IXPS] Add 4GLAs fit function
// - [IXPS] Small bug fix on display selected param. map (applied auto-intensity)
//SLPA ver. ce20170606b.ipf
// - [IXPS] Add 3GLAs fit function
//SLPA ver. ce20170606a.ipf
// - [IXPS] adjust LLim and ULim after loading
// - [IXPS] Bug fixes for the Display/selected image vs. histogram and auto intensity adjust
//SLPA ver. ce20170430b.ipf
// - [IXPS] Change to green color
//SLPA ver. ce20170430a.ipf
// - [IXPS] Copy fit coef. from another scan
//SLPA ver. ce20170429b.ipf
// - [IXPS] Update fit mask LLim and ULim variable with scan selection
// - [IXPS] Copy screen mask from another scan (with the same bin)
//SLPA ver. ce20170429a.ipf
// - [IXPS] 1GLA fit mode added
// - [IXPS] Hold functionality for keeping fit coef. constant
//SLPA ver. ce20170424a.ipf
// - [IXPS] Improve the auto range funtionality - use median then average MatrixFilter (avg works quite well with NaN)
//SLPA ver. ce20170424a.ipf
// - [IXPS]
// - Correc the Image selection function - should work properly now
// - Do a 'low pass filter' with MatrixFilter in the 'median' mode to remove speckles. The histogram looks much better this way.
// - Automatically set the Color min/max using the LPF'ed Map
// - Update the color min/max slider and color min/max update the ParamDisplayW
// - Clean up the DisplaySel function (call the SelectImage function instead of doing it by itself)
//SLPA ver. ce20170420a.ipf
// - [NEX] Load scans.. button is now load only one scan at a time. It also checks and corrects the scan name automatically.
// - [IXPS] Auto create correction (using 2d parabolic correction function)
//SLPA
// - Load_LEEMDAT_ce20170226a.ipf
// - SLP_NEXAFS_ce20170104a.ipf
// - DispXPS_Panel_ce20170302f.ipf
// - ImgXPS_Panel_ce20170321e.ipf
// - SLP_Util_ce20170226a.ipf
//ver. ce20170104a
// - Add SLP_Load_oldLEEM_Img() - Load old .DAT file from Elmitec LEEM (before 2014)
//ver. ce20161216a
// - Add image creation date/time in the param list
//ver. ce20161215c
// - Add Image notes
// - Some cosmetic changes
// - Bug fix on deleting many DataSet
//ver. ce20161215b
// - Delete dataset is available. It warns when some images are in used. Dataset won't be deleted in that case.
//ver. ce20161214a
// - Cross-hair in the Find screen dialog (only if the x-y scale is not set). Values of new x_center and y_center can be manually changed.
// - Change Plot single image button to Plot fullsize image (required that the data file is accessible). Plot single image still works with double clicking the image name in the list
//ver. ce20161210a
// - Stitch - ROI can be modified. Mask creation window also shows selected image behind the mask.
//ver. ce20161209a
// - Add functions to scale images, find screen position, and image stitching
// - Plot the displayed image w/ description legend
// - Export selected images to TIFF files in selected folder w/ a .csv file containing image details
//[from Stitch .ipf Ver. ce20161128a.ipf
// - Work with LoadLEEM .ipf
// - Set scale for selected images in the dataset. Scale can be pixel, relative or absolute (offset with Mitutoyo X,Y reading).
//Ver. ce20161207a.ipf
// - Stitching almost works. Need algorithm for some FOV adjustment (e.g. 75um FOV is not really
//ver. ce20161119a
// - Load images (.DAT) in batch. Read and store important LEEM/PEEM parameters from the header of the image file
//ver.ce20161123a
// - User interface
// - Load sets of image and automatically save the image set.
//ver.ce20161124a
// - Bug fixed - solve the problem when the some image number is missing. Change the search algorithm in the SLP_LL_setup function (now ver.2)
// - Record no. of images in the 4th column of DatasetListW
// - Cosmetic change to the image plot display
//ver. ce20161126a
// - New dataset selection and display automatically after loading
// - Default resize option is 0.25 and is kept afterward
// - Bug fixed - parameter display update
// - Dataset name suggestion using folder name
//ver. ce20161127a
// - Warn when users use duplicated dataset name
//ver. ce20161127b
// - Remove the 128 dataset limit. ImgSetListW size is increased with added datasets
// - use 'row=" in the ListBox selection so that the selection is always visible when switching between datasets
// - Prevent users from clicking outside the range in Image and DataSet listboxes
//ver. ce20161127c
// - Image/dataset selection with SelWave
// - Select all/select none buttons for image list
//ver. ce20161127d
// - Image ctab (colour/first colour/last colour)is retained for the next image selection. It is saved for the next time the program is run
//ver. ce20170226a
// - Add new image load panel. The multiple image loading is easier and more efficient.
// - Bug fix on the deleting datasets (the previous version doesn't use /TXOP=6 in the FindValue so the deletion had been wrong
/////////////////////////////////////
/////////////ARCHIVE/////////////////
/////////////////////////////////////
//CODE: DispXPSPanel
//Ver. ce20170301a
// - First working version
// - Data loaded and saved in separated folders (Raw data in one folder)
// - Adjust threshold and minimum disp. size (in pixels) to find a dispersive line automatically
// - Extract XPS spectra from different position in the disp. line (several param. can be selected in the panel)
// - Disp. factor and energy position can be calibrated in the panel
//Ver. ce20170301b
// - Can now choose Disp. line and subsequent P. lines gen. param. from another scan (helps when measuring low S/N scans, or Ef)
// - Can correct the first frame which sometimes has unusually high intensity (by copying the second frame onto it - losing 1 data point).
//Ver. ce20170301c
// - Can remove the raw data to reduce the project file size.
// - Small code clean-up
//Ver. ce20170301d
// - Can restore raw data for re-processing
//Ver. ce20170302a
// - Small bug fixes (control toggling when scan has/has no raw data
// - Select all/select none buttons
//Ver. ce20170302b
// - Export and plot results (combined spectrum only)
//Ver. ce20170302c
// - Add Scan Note (all the parameters used in the data extraction) to the exported wave
//Ver. ce20170302d
// - Bug fixed: Error when trying to adjust Disp. Factor/x0/y0 w/o raw data (removed a wave refrence to the raw data)
// - Bug fixed: Copy dispersive line from.. button -> Error conditioning with V_Flag (Continue -> V_Flag=0)
// - Bug fixed: NLines is not stored in the ScanListW! -> Fixed
// - Check ScanName and make suggestions for users to conform to Standard Wave Name. [CODE: SLP_Util_WNameCheck], [CODE: SLP_Util_WNameSuggest]
//Ver. ce20170302e
// - Manual edit of the disp. line
//Ver. ce20170302f
// - Cosmetic change - panel colour = blue
//[POS]IXPS Begin
//CODE: ImgXPSPanel
//
// Ver.ce20170310c
// - Almost working - Ver. 0.7
// - Can Load and display image volume w/ slider
// - Automatic screen mask creation
// - Loop data fitting for (binned) each pixel
// - Extraction progress (in %)
// - Load correction waves from DataBrowser window
// - Correction fine-adjustment (x,y,magnitude)
// Ver.ce20170311a
// - ListBoxProc for DisplayListW
// - ListBoxProc for XPS param ListW
// Ver.ce20170311b
// - Auto color scale/int. for the image volume/maps
// - Some fix on using the ScanList ListBox
// - properly show ImgVol or IntgImg depending on whether there is raw data stored in the project
// Ver.ce20170311d
// - Can now use slider to adjust color scale
// - Radio button to select which Image to adjust the color scale
// - Use STRUCT of the checkbox control.
// Ver.ce20170312a
// - Export/display maps
// - Still with some bugs
// - Can still extract only the cutoff (w/ ERF fit) for WF measurements
// Ver. ce20170312b
// - First working version - Ver. 1.0
// - Many bug fixes..
// Ver. ce20170317a
// - Small bug fix (automatically select newly loaded Scans, display fitted curve)
// Ver. ce20170321b
// - Can now select which fitting mode to use (2 modes - Secondary Yield Cut-off for WF measurements, and 2GLAs for isochromaticity map)
// - 'Fast Extraction' mode (much faster with /N=1 in FuncFit)
// Ver. ce20170321c
// - Adjust Threshold for finding screen
// Ver. ce20170321d
// - Clean up the windows. Move graph and control positions.
// Ver. ce20170321e
// - Init check. Bug fixes (not 100% yet)
//Igor procedure to assist BL3.2Ub operation and data analyses
//ver. ce20161031a
// - Can load, draw line, change line profile width, and plot profile and intensity vs. time plot
// - Still very buggy
//ver. ce20161107b
// - Initialize program (creating Package waves, global variables, etc.)
// - Plotting the result
// - Label and formatting graph
// - Stored and display previous image series
// - Updating line profiles with line profile width
// - Remove old line profile (bottom graph)
//ver. ce20161111a
// - Keep raw images and line profiles in separated folders
//ver. ce20170226a
// - Change name to SLP_XPS
// - Merge SLP_WF_ce20170208a.ipf (WF mapping)
// - Merge SLP_CreateDispLines_ce20170214a.ipf (Automatic dispersion line finding and multiple-point data collection for XPS)
//Current ver. ce20161114a
// Todos
// - New DataSet system (from SLP_LoadLEEM)
// - Filter for file loading (e.g. *.TIF)
// - Option to load .DAT and extract data
// - Auto calculation of dispersion (eV/pixel)
// - Show line profile width
// - Delete raw data (to save disk space)
// - Clean up the code
/////////////////////////////////////
/////////////TODOs/////////////////
/////////////////////////////////////
// [LEED-IV]
// - Extract IV curves from LEEM's LEED
// [UTIL]
// - Sine Sound wave should be put inside UTIL folder
// - W_StatsQuantiles should be put inside UTIL folder
// - Project creation
// - Auto detect/index new data
// - Auto update??
// - Report creation assist - Report panel
// [LoadLEEM]
// + Functionality
// - ***Make notes for individual images [to be used for Report Making feature]
// - **Report making
// - Record time when images have been captured
// + Bug fixes
// - Editable note column for images and dataset
// - Load TIFF&other file types as well
// - Should be able to distinguish the LEED/Disp. mode and prevent program from interrupting the processes
// - Error when all datasets are deleted
// - FOV name table <-> FOV variable
// [NEXAFS]
// - Option to load existing wave instead of from .txt file (e.g. z-profile waves extracted from [ImgXPS]
// - Fit and Global fit
// - Report creation - export to LaTeX
// - Rescale selected graph button
// - Clear all graph selections button
// - Memorise recipe parameter values
// [ImgXPS]
// - Put data in 'ImgXPS' folder
// - LPF image should be put in ImgXPS folder
// - Warn when user don't enter FOV
// - Volume data pre-processing - [z-wave] Normalize, subtraction, and [xy wave] Isochromaticity correction, brightness correction before extraction
// + Additional features *
// - Th. adj. for screen mask creation
// - Error report when scrn. msk. creation is not successful
// - Coef. real-time display for curve fitting
// - Est. time for extraction
// - Quick ext. mode (no fit display)
// - Error marking for bad fit.
// [DispXPS]
// - Export
// - Show the notes in the label instead of wavename
// - Export to GLAFit
// - Use 'absolute' scale (in ref. to the MCP screen size).
// Bug fixes
// - Axis label disappears for both indv. and cmbn. plots
// - Disp. and P. lines display is not correct sometimes.
// [DLA]
// - Bug fixes - duplicate Voronoi cell
// - Manually movable/editable/addable island centers
//MENU BAR
Menu "SLPA"
"Launcher..",SLP_Util_CreateLauncher_small()
"Load LEEM images..",SLP_LL_CreatePanel01()
"Load NEXAFS scans..",SLP_NEX_CreatePanel()
"Imaging XPS..",SLP_IXPS_CreatePanel1()
"Dispersive XPS..",SLP_DXPS_CreatePanel1()
"DLA analysis..",SLP_DLA_CreatePanel01()
"Multi-GLAs Fit..",SLP_MGFit_CreatePanel()
End
///////////////
//UTILITY BELT
///////////////
Function SLP_Util_PanelColorScale()
DoWindow /K SLP_ColorScalePanel
NewPanel /W=(130,90,610,215) /N=SLP_ColorScalePanel
NVAR SetValue_Min=root:Package_SLP:Util:CScale:SetValue_Min
NVAR SetValue_Max=root:Package_SLP:Util:CScale:SetValue_Max
NVAR MinValue=root:Package_SLP:Util:CScale:MinValue
NVAR MaxValue=root:Package_SLP:Util:CScale:MaxValue
NVAR Rev_Flg=root:Package_SLP:Util:CScale:Rev_Flg
SVAR ColorTable=root:Package_SLP:Util:CScale:ColorTable
String ImageName=Stringfromlist(0,ImageNameList("",";"))
Wave ImgW=ImageNameToWaveRef("",ImageName)
ImageStats /Q ImgW
MinValue=V_Min
MaxValue=V_Max
String ImgInfo=ImageInfo("",ImageName,0)
String ImgCtab=StringByKey("RECREATION",ImgInfo)
String ImgColor=ImgCtab[7,strlen(ImgCtab)-2]
SetValue_Min=str2num(StringFromList(0,ImgColor,","))
SetValue_Max=str2num(StringFromList(1,ImgColor,","))
Variable Button_X=300
Variable Button_XSize=75
Variable Button_Y=35
Button Button_AutoScale,pos={Button_X,Button_Y},size={Button_XSize,20}, Fsize=10,title="Auto Scale",proc=ButtonProc_Util_ColorScalePanel
Button Button_AutoRange,pos={Button_X,Button_Y+20},size={Button_XSize,20}, Fsize=10,title="Auto Range",proc=ButtonProc_Util_ColorScalePanel
Button Button_Range,pos={Button_X,Button_Y+40},size={Button_XSize,20}, Fsize=10,title="Range..",proc=ButtonProc_Util_ColorScalePanel
Button Button_Done,pos={Button_X,Button_Y+60},size={Button_XSize,20}, Fsize=10,title="Done",proc=ButtonProc_Util_ColorScalePanel
DrawText 5,20,"\Z12Adjust colour scale"
DrawText 5,40,"Min:"
DrawText 5,90,"Max:"
Slider Slider_MinValue,pos={35,25},size={240,30}, title="Min value",vert=0,limits={MinValue,MaxValue,0.01},proc=SliderProc_Util_ColorScale,ticks=20,variable=SetValue_Min
Slider Slider_MaxValue,pos={35,75},size={240,30}, title="Max value",vert=0,limits={MinValue,MaxValue,0.01},proc=SliderProc_Util_ColorScale,ticks=20,variable=SetValue_Max
PopupMenu popup_CtabList,pos={119,4},size={200,20},proc=PopMenuProc_Util_ColorScale
PopupMenu popup_CtabList,mode=4,value= #"\"*COLORTABLEPOP*\""
CheckBox check_Reverse,pos={325,7},size={52,15},proc=CheckProc_Util_RevFlg,title="Reverse"
CheckBox check_Reverse,value= 0
Button Button_DefaultScale,pos={Button_X+85,Button_Y+20},size={75,20},proc=ButtonProc_Util_ColorScalePanel,title="Set to default"
Button Button_DefaultScale,fSize=10
Button Button_SetAsDefault,pos={Button_X+85,Button_Y+40},size={75,20},proc=ButtonProc_Util_ColorScalePanel,title="Set as default"
Button Button_SetAsDefault,fSize=10
Button Button_SetDefault,pos={Button_X+85,Button_Y+60},size={75,20},proc=ButtonProc_Util_ColorScalePanel,title="Set default.."
Button Button_SetDefault,fSize=10
DrawText 381,50,"Default"
SetDrawEnv fillpat= 0
DrawRect 380,51,463,117
//ModifyImage /W=Cutoff $ImageName ctab= {SetValue_Min,SetValue_Max,Rainbow,0}
End
Function PopMenuProc_Util_ColorScale(pa) : PopupMenuControl
STRUCT WMPopupAction &pa
switch( pa.eventCode )
case 2: // mouse up
Variable popNum = pa.popNum
String popStr = pa.popStr
String ImageName=Stringfromlist(0,ImageNameList("",";"))
ControlInfo /W=SLP_ColorScalePanel check_Reverse
Variable Rev_Flg=V_Value
ModifyImage $ImageName ctab= {,,$popStr,Rev_Flg}
SVAR ColorTable=root:Package_SLP:Util:CScale:ColorTable
ColorTable=popStr
break
case -1: // control being killed
break
endswitch
return 0
End
Function CheckProc_Util_RevFlg(cba) : CheckBoxControl
STRUCT WMCheckboxAction &cba
switch( cba.eventCode )
case 2: // mouse up
Variable checked = cba.checked
NVAR Rev_Flg=root:Package_SLP:Util:CScale:Rev_Flg
Rev_Flg=checked
String ImageName=Stringfromlist(0,ImageNameList("",";"))
ModifyImage $ImageName ctab= {,,,Rev_Flg}
break
case -1: // control being killed
break
endswitch
return 0
End
Function ButtonProc_Util_ColorScalePanel(ba) : ButtonControl
STRUCT WMButtonAction &ba
String ImageName
String ImgW_FName
Variable ImgMedian,ImgQ25,ImgQ75
NVAR MinValue=root:Package_SLP:Util:CScale:MinValue
NVAR MaxValue=root:Package_SLP:Util:CScale:MaxValue
NVAR SetValue_Min=root:Package_SLP:Util:CScale:SetValue_Min
NVAR SetValue_Max=root:Package_SLP:Util:CScale:SetValue_Max
NVAR SetValueMin_Default=root:Package_SLP:Util:CScale:SetValueMin_Default
NVAR SetValueMax_Default=root:Package_SLP:Util:CScale:SetValueMax_Default
NVAR Rev_Flg_Default=root:Package_SLP:Util:CScale:Rev_Flg_Default
SVAR ColorTable=root:Package_SLP:Util:CScale:ColorTable
NVAR Rev_Flg=root:Package_SLP:Util:CScale:Rev_Flg
switch( ba.eventCode )
case 2: // mouse up
// click code here
StrSwitch (ba.CtrlName)
case "button_Done":
DoWindow/K SLP_ColorScalePanel
break
case "Button_Range":
ImageName=Stringfromlist(0,ImageNameList("",";"))
Wave ImgW=ImageNameToWaveRef("",ImageName)
ImgW_FName=GetWavesDataFolder(ImgW,1)+NameofWave(ImgW)
ControlInfo Slider_MinValue
Variable MinValue_prompt=MinValue
Variable MaxValue_prompt=MaxValue
Prompt MinValue_prompt,"Minimum intensity"
Prompt MaxValue_prompt,"Maximum intensity"
DoPrompt "Enter parameters",MinValue_prompt,MaxValue_prompt
If (V_Flag==0)
MinValue=MinValue_Prompt
MaxValue=MaxValue_Prompt
Slider Slider_MinValue,limits={MinValue,MaxValue,(MaxValue-MinValue)/200}
Slider Slider_MaxValue,limits={MinValue,MaxValue,(MaxValue-MinValue)/200}
EndIF
break
case "Button_AutoRange":
ImageName=Stringfromlist(0,ImageNameList("",";"))
Wave ImgW=ImageNameToWaveRef("",ImageName)
ImgW_FName=GetWavesDataFolder(ImgW,1)+NameofWave(ImgW)
ImgMedian=SLP_Util_FindImgMedian(ImgW_FName,0)
ImgQ25=SLP_Util_FindImgMedian(ImgW_FName,1)
ImgQ75=SLP_Util_FindImgMedian(ImgW_FName,2)
MaxValue=ImgMedian+(ImgQ75-ImgMedian)*2
MinValue=ImgMedian-(ImgMedian-ImgQ25)*2
Slider Slider_MinValue,limits={MinValue,MaxValue,(MaxValue-MinValue)/200}
Slider Slider_MaxValue,limits={MinValue,MaxValue,(MaxValue-MinValue)/200}
break
case "Button_AutoScale":
ImageName=Stringfromlist(0,ImageNameList("",";"))
Wave ImgW=ImageNameToWaveRef("",ImageName)
ImgW_FName=GetWavesDataFolder(ImgW,1)+NameofWave(ImgW)
ImgQ25=SLP_Util_FindImgMedian(ImgW_FName,1)
ImgQ75=SLP_Util_FindImgMedian(ImgW_FName,2)
ModifyImage $ImageName ctab= {ImgQ25,ImgQ75,$ColorTable,Rev_Flg}
SetValue_Min=ImgQ25
SetValue_Max=ImgQ75
break
case "Button_DefaultScale": //Use default setting
ImageName=Stringfromlist(0,ImageNameList("",";"))
SetValue_Min=SetValueMin_Default
SetValue_Max=SetValueMax_Default
Rev_flg=Rev_Flg_Default
ModifyImage $ImageName ctab= {SetValue_Min,SetValue_Max,$ColorTable,Rev_flg}
CheckBox check_Reverse win=SLP_ColorScalePanel,value=Rev_flg
break
case "Button_SetAsDefault": //Set current values as default
ImageName=Stringfromlist(0,ImageNameList("",";"))
SetValueMin_Default=SetValue_Min
SetValueMax_Default=SetValue_Max
Rev_Flg_Default=Rev_Flg
break
case "Button_SetDefault": //Enter default values (prompt)
Variable Min_DefaultPrompt=SetValueMin_Default
Variable Max_DefaultPrompt=SetValueMax_Default
String Rev_Flg_txt
If (Rev_Flg_Default==0)
Rev_Flg_txt="no"
Else
Rev_Flg_txt="yes"
EndIf
Prompt Min_DefaultPrompt "Default minimum"
Prompt Max_DefaultPrompt "Default maximum"
Prompt Rev_Flg_Txt,"Reverse color",popup,"yes;no"
DoPrompt "Enter parameters", Min_DefaultPrompt,Max_DefaultPrompt,Rev_Flg_Txt
If (V_Flag==0) //User clicks 'Continue'
SetValueMin_Default=Min_DefaultPrompt
SetValueMax_Default=Max_DefaultPrompt
Rev_Flg_Default=stringmatch(Rev_Flg_Txt,"yes") //Flag for reverse color
EndIF
break
EndSwitch
break
case -1: // control being killed
break
endswitch
return 0
End
Function SliderProc_Util_ColorScale(sa) : SliderControl
STRUCT WMSliderAction &sa
NVAR SetValue_Min=root:Package_SLP:Util:CScale:SetValue_Min
NVAR SetValue_Max=root:Package_SLP:Util:CScale:SetValue_Max
switch( sa.eventCode )
case -1: // control being killed
break
default:
if( sa.eventCode & 1 ) // value set
Variable curval = sa.curval
If (stringmatch(sa.CtrlName,"Slider_MinValue"))
SetValue_Min=curval
ElseIf (stringmatch(sa.CtrlName,"Slider_MaxValue"))
SetValue_Max=curval
EndIf
String ImageName=Stringfromlist(0,ImageNameList("",";"))
ControlInfo /W=SLP_ColorScalePanel check_Reverse
Variable Rev_Flg=V_Value
ModifyImage $ImageName ctab= {SetValue_Min,SetValue_Max,,Rev_Flg}
endif
break
endswitch
return 0
End
Function SLP_Util_FindImgMedian(ImgW_FName,OptFlg)
//Find median without NaN
String ImgW_FName
Variable OptFlg //0=median,1=Q25,2=Q75
Wave ImgW=$ImgW_FName
variable i=1
variable centerP=floor(dimsize(ImgW,0)/2)
variable centerQ=floor(dimsize(ImgW,0)/2)
variable ImgMedianInt_tmp=0
variable ImgMedianInt=0
//Start from small area in the middle. Expand until NaN is found
Do
ImgMedianInt=ImgMedianInt_tmp
Duplicate /O/R=[centerP-i,centerP+i][centerQ-i,centerQ+i] ImgW,SmImgW
ImgMedianInt_tmp=statsmedian(SmImgW)
i+=1
While (i<dimsize(ImgW,0)/2&&numtype(ImgMedianInt_tmp)==0)
StatsQuantiles /Q SmImgW
Killwaves SmImgW
Variable Result=0
switch(OptFlg) // numeric switch
case 0: // execute if case matches expression
Result=ImgMedianInt
break // exit from switch
case 1: // execute if case matches expression
Result=V_Q25
break
case 2: // execute if case matches expression
Result=V_Q75
break
endswitch
Return Result
End
Function ButtonProc_Util_FindCutOff(ba) : ButtonControl
STRUCT WMButtonAction &ba
switch( ba.eventCode )
case 2: // mouse up
// click code here
string TraceList=TracenameList("",";",1)
String TraceName=""
prompt TraceName,"Trace to find ERF cutoff",popup,TraceList
DoPrompt "Select trace",TraceName
If (V_Flag==0) //User clicks 'Continue'
Wave DataW=TraceNameToWaveRef("",Tracename)
//display DataW
String DataW_Name= NameofWave(DataW)
String DataW_FName= GetWavesDataFolder(DataW,1)+DataW_Name
SLP_Util_FindCutoff(DataW_FName,1)
EndIF
break
case -1: // control being killed
break
endswitch
return 0
End
Function ButtonProc_Util_Launch(ba) : ButtonControl
STRUCT WMButtonAction &ba
switch( ba.eventCode )
case 2: // mouse up
// click code here
strswitch (ba.ctrlName) //Name of the image (note the use of WMCheckBoxAction STRUCT)
case "button_LEEMImage":
SLP_LL_CreatePanel01()
break
case "button_ImgXPS":
SLP_IXPS_CreatePanel1()
break
case "button_DispXPS":
SLP_DXPS_CreatePanel1()
break
case "button_NEX":
SLP_NEX_CreatePanel()
break
case "button_DLA":
SLP_DLA_CreatePanel01()
break
case "button_MGFit":
SLP_MGFit_CreatePanel()
break
case "button_Util":
NVAR Launcher_expand=root:Package_SLP:Util:Launcher_expand
If (Launcher_expand)
SLP_Util_CreateLauncher_small()
Else
SLP_Util_CreateLauncher()
EndIf
break
case "button_Done":
DoWindow/K SLP_Launcher
break
EndSwitch
break
case -1: // control being killed
break
endswitch
return 0
End
Function SLP_Util_CreateLauncher() : Panel
Dowindow /K SLP_Launcher
PauseUpdate; Silent 1 // building window...
NewPanel /W=(100,49,852,417) /N=SLP_Launcher
ModifyPanel fixedSize=1
SetDrawLayer UserBack
SetDrawEnv fsize= 18
DrawText 14,30,"SLRI LEEM PEEM Analysis"
SetDrawEnv fsize= 14
DrawText 12,52,"Launcher"
SetDrawEnv fsize= 30
DrawText 659,361,"SLPA"
SetDrawEnv fillpat= 0
DrawRect 230,32,739,359
Button button_LEEMImage,pos={12,57},size={102,64},proc=ButtonProc_Util_Launch,title="LEEM image"
Button button_Done,pos={11,339},size={50,20},title="done",proc=ButtonProc_Util_Launch
Button button_ImgXPS,pos={120,57},size={102,64},proc=ButtonProc_Util_Launch,title="Imaging XPS",fColor=(26205,52428,1)
Button button_DispXPS,pos={12,125},size={102,64},proc=ButtonProc_Util_Launch,title="Dispersive XPS",fColor=(0,43690,65535)
Button button_NEX,pos={120,126},size={102,64},proc=ButtonProc_Util_Launch,title="NEXAFS"
Button button_DLA,pos={13,192},size={102,64},proc=ButtonProc_Util_Launch,title="DLA analysis"
Button button_MGFit,pos={121,192},size={102,64},proc=ButtonProc_Util_Launch,title="Multi GLAs fit"
Button button_Util,pos={121,262},size={102,64},title="Utility",proc=ButtonProc_Util_Launch
TabControl tab1,pos={238,4},size={430,21},tabLabel(0)="Graph"
TabControl tab1,tabLabel(1)="Color scale",tabLabel(2)="Report",tabLabel(3)="Log"
TabControl tab1,tabLabel(4)="XPS tools",value= 0,disable=2
Button button_FindCutoff,pos={248,44},size={100,20},proc=ButtonProc_Util_FindCutOff,title="Find ERF cutoff",fSize=10
Button button_MakeRainbow,pos={247,68},size={100,20},proc=ButtonProc_Util_TraceColors,title="Make rainbow",fSize=10
Button button_MakeRedgradient,pos={247,94},size={100,20},proc=ButtonProc_Util_TraceColors,title="Make red gradient",fSize=10
Button button_ColorScale,pos={247,124},size={100,20},proc=ButtonProc_Util_TraceColors,title="Change color scale",fSize=10
Button button_ObjStv,pos={247,164},size={100,20},proc=ButtonProc_Util_TraceColors,title="Find OBJ vs STV",fSize=10
Button button_OffsetZ,pos={247,197},size={100,20},proc=ButtonProc_Util_TraceColors,title="Offset intensity",fSize=10
SetDrawEnv fsize=10;DrawText 351,61,"Find location of photoemission cut-off when doing workfunction measurement"
SetDrawEnv fsize=10;DrawText 351,90,"Change trace colors in multi-trace graph to rainbow"
SetDrawEnv fsize=10;DrawText 351,120,"Change trace colors in multi-trace graph to red with different shades"
SetDrawEnv fsize=10;DrawText 351,150,"For 2D image plot. Can change the scale automatically based on median value"
SetDrawEnv fsize=10;DrawText 355,180,"Find relationship between Objective lens and Start Voltage"
SetDrawEnv fsize=10;DrawText 355,212,"Offset intensity level of background to equalize and compare 2D maps"
NVAR Launcher_expand=root:Package_SLP:Util:Launcher_expand
Launcher_expand=1
End
Function SLP_Util_CreateLauncher_small() : Panel
If (!DatafolderExists("root:Package_SLP:Util"))
SLP_Util_Init()
EndIf
PauseUpdate; Silent 1 // building window...
Dowindow /K SLP_Launcher
NewPanel /W=(100,49,332,419) /N=SLP_Launcher
ModifyPanel fixedSize=1
SetDrawLayer UserBack
SetDrawEnv fsize= 18
DrawText 14,30,"SLRI LEEM PEEM Analysis"
SetDrawEnv fsize= 14
DrawText 12,52,"Launcher"
SetDrawEnv fsize= 30
DrawText 146,367,"SLPA"
Button button_LEEMImage,pos={12,57},size={102,64},proc=ButtonProc_Util_Launch,title="LEEM image"
Button button_Done,pos={11,339},size={50,20},title="done",proc=ButtonProc_Util_Launch
Button button_ImgXPS,pos={120,57},size={102,64},proc=ButtonProc_Util_Launch,title="Imaging XPS"
Button button_ImgXPS,fColor=(26205,52428,1)
Button button_DispXPS,pos={12,125},size={102,64},proc=ButtonProc_Util_Launch,title="Dispersive XPS"
Button button_DispXPS,fColor=(0,43690,65535)
Button button_NEX,pos={120,126},size={102,64},proc=ButtonProc_Util_Launch,title="NEXAFS"
Button button_DLA,pos={13,192},size={102,64},proc=ButtonProc_Util_Launch,title="DLA analysis"
Button button_MGFit,pos={121,192},size={102,64},proc=ButtonProc_Util_Launch,title="Multi GLAs fit"
Button button_Util,pos={121,262},size={102,64},title="Utility",proc=ButtonProc_Util_Launch
NVAR Launcher_expand=root:Package_SLP:Util:Launcher_expand
Launcher_expand=0
End
Function ButtonProc_Util_TraceColors(ba) : ButtonControl
STRUCT WMButtonAction &ba
switch( ba.eventCode )
case 2: // mouse up
// click code here
strswitch (ba.ctrlName) //Name of the image (note the use of WMCheckBoxAction STRUCT)
case "button_MakeRainbow":
SLP_Util_MakeRainbow()
break
case "button_MakeRedGradient":
SLP_Util_MakeRedGradient("")
break
case "button_ColorScale":
SLP_Util_PanelColorScale()
break
case "button_ObjStv":
SLP_Util_PanelObjStv()
break
case "button_OffsetZ":
If (Stringmatch(CsrInfo(A),""))//If cursor A is not on graph
DoAlert 0,"Put Cursor A on the background area in the image"
Else
variable Current_Z=zcsr(A)
NVAR NewZ=root:Package_SLP:Util:NewZ
Variable NewZ_Prompt=NewZ
Prompt NewZ_Prompt,"New Z value"
DoPrompt "Enter parameter",NewZ_Prompt
NewZ=NewZ_Prompt
IF (V_Flag==0) //Press Continue
String ImageName=Stringfromlist(0,ImageNameList("",";"))
Wave ImgW=ImageNameToWaveRef("",ImageName)
ImgW-=(Current_Z-NewZ)
Print "======================="
Print ImageName+"'s Z has been offset"
Print "Original Z value = "+num2str(Current_Z)+", new Z value = "+num2str(NewZ)
Print "Cursor x: "+num2str(hcsr(A))+" ["+num2str(pcsr(A))+"]"
Print "Cursor y: "+num2str(vcsr(A))+" ["+num2str(qcsr(A))+"]"
Print "======================="
EndIF
EndIf
break
EndSwitch
break
case -1: // control being killed
break
endswitch
return 0
End
//////////////
//Multi GLAs Fit
//////////////
//USE OFTEN
Function SLP_MGFit_UseOften()