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SLPA_ce20181107b.ipf
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SLPA_ce20181107b.ipf
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#pragma rtGlobals=3 // Use modern global access method and strict wave access.
/////////////////////////////////////
//////////CHANGE LOG/////////////////
////////////////////////////////////
//SLPA ver. ce20181023a.ipf
// - [DXPS] - Add option to export scans into .txt files (energy and intensity column)
// SLPA ver. ce20180927b.ipf
// - [NEXAFS] - Add 'Equalize step' step in recipe. This will do interpolation (with interpolation2 function) to make the step equal. It can also be used to SetScale of the Proc wave (for Fitting).
// - [NEXAFS] - Change the default recipe to normalize the data by Izero, then make preedge = 0 and postedge = 1.
// SLPA ver. ce20180927a.ipf
// - [UTIL] - Add SLP_Util_EqualizeStep() to cope with new NEXAFS data with variable energy step
// SLPA ver. ce20180719c.ipf
// - [IXPS] - Update the fit ERF curve in 'Secondary yield cut-off' mode
// SLPA ver. ce20180719b.ipf
// - [IXPS] - Bugfix - Remember the ImgVol cursor pos
// SLPA ver. ce20180719a.ipf
// - [IXPS] - Memorise the CMap cursor
// SLPA ver. ce20180718a.ipf
// - [IXPS] - Ask to offset z to reference value when user plots the corrected map (CMap)
// SLPA ver. ce20180714c.ipf
// - [IXPS] - Add 'Export histogram" to export the histogram.
// SLPA ver. ce20180714b.ipf
// - [IXPS] - Add 'Auto color' button to automatically adjust zMin/zMax of the selected Map
// SLPA ver. ce20180714a.ipf
// - [IXPS] - Add 'Histogram..' button to change the histogram min/max/bin
// SLPA ver. ce20180712a.ipf
// - [IXPS]
// - Bux fixes - change how DisplaySelectedData and SelectImage work.
// - Automatically find the zMin/zMax
// - Histogram min/max/bin are found automatically from zMin/zMax. The values are kept independently from zMin/zMax
// SLPA ver. ce20180525c.ipf [MAJOR UPDATE]
// - [IXPS] Add Manual Isochromaticity Correction (IXPS_ManCorr) from file IXPS_ManCorr ver ce20180525d.ipf
// - Display manual correction for selected map (UMap). Have Sliders and SetVars for map correction.
// - Auto fit possible
// - Load from and save to preset
// - Export and import preset files
// - Adjustable slider ranges (for rough/fine adjustment)
// - New Ref point where the UMap and CMap will keep the same value
// - Offset/Scaling/Rotation correction have been moved to ManCorr panel
// - Color scale range is imported from the main ImgXPS panel (From ParamW). It can be adjusted here and the new setting is updated back to the main ImgXPS panel.
// - Notes for describing presets
// - Tidy up the panel
//SLPA ver. ce20180505a.ipf
// - [IXPS] - IXPS2 -Re-write the peak fitting part.
// - Can now fit arbitrary number of peaks (XPS only).
// - Now fitting can use different types of background (None, flat,slope, ERF, atan, Shirley and linear)
// - After fitting, the program can also show individual components and BG used during the extraction.
//SLPA ver. ce20180418e.ipf
// - [IXPS] - Bug fix: Copy minX,maxX,minY,maxY when the ROI is adopted from another scan
//SLPA ver. ce20180418d.ipf
// - [IXPS] - Display dashed line to show where on the z-profile the frame is currently on
//SLPA ver. ce20180418c.ipf
// - [IXPS] - Now the loaded data and processed images are kept in DispXPS folder instead of root folder to prevent clusters.
//SLPA ver. ce20180418b.ipf
// - [IXPS] - Bugfix: Auto color scale and the color slider limits.
//SLPA ver. ce20180418a.ipf
// - [IXPS] - Bugfix: Find minX,maxX,minY,maxY when the ROI is manually drawn
//SLPA ver. ce20180417c.ipf
// - [IXPS] - Check whether user enter FOV during the load scan.
//SLPA ver. ce20180417b.ipf
// - [DXPS] - Remove dependencies of Cmbnd and CmbndBE waves before data deletion to prevent delete errors.
//SLPA ver. ce20180409b.ipf
// - [UTIL] - Add OBJ vs STV panel in Utility Belt (find parameter for IXPS scans)
// - [UTIL] - Modify colour scale adjust panel in Utility Belt (can now change color table 'ctab' and set/apply default setting.
// - [UTIL] - Adjust z value for image wave (to offset and equalize BG for e.g. parameter map comparisons)
//SLPA ver. ce20180405a.ipf
// - [DXPS] - Bugfixes - Select and enable all parameter input after loading new data.
// - [DXPS] - Automatically generate result after 'Copy Dispersion from'
// - [UTIL] - Bugfixes - prevent error when a non-graph window is active.
//SLPA ver. ce20180404b.ipf
// - [IXPS] - Isochromaticity [SLP_IXPS_GenIsochrome]: Change from using 2D paraboloid to 'Rosenbrock's Banana Function' to better represent the isochromaticity of the PEEM's optics.
//SLPA ver. ce20180402b.ipf
// - [UTIL] - Add Color scale adjust panel
//SLPA ver. ce20180402a.ipf
// - [UTIL] - Add Launcher panel (under Util section)
//SLPA ver. ce20180319a.ipf
// - [MGFit] - Add multi-GLA peak fitting program (MGFit modules)
//Function
// - Slider
// - BG subtraction
// - Peak select
// - Copy Guess values
// - Default constraint
// - use default constraint and edit
// - Peak library and import peak library from a .txt file
// - Colour changes /w hold or guess out of range
// - Save/Load guesses
// - Fit and show fit results
// - Display last fit result
// - BG adjust and record
// - Export fit results
// - Check for duplicated new data W name
// - Allow user to change data W name
// - Peak area report
// - Fine steps for guess coef. adjustment
// - Display 'Kn' for each parameter
// - Arbitrary constraints
// - Default constraint for all peaks
//TODOs
// - Font too big for Window Igor - Need to increase the panel size
//SLPA ver. ce20180222a.ipf
// - [UTIL] Bug fix: SLP_Util_ShirleyGen to be able to create Shirley BG for both positive and negative dE.
//SLPA ver. ce20180221a.ipf
// - [DXPS] SLP_DXPS_Convert4PCA() - convert Map Volume Wave into a table to be used for PCA analysis software
//SLPA ver. ce20180219a.ipf
// - [UTIL] SLP_Util_Split2D() to split 2D wave (e.g. TRXPS scan) into multiple 1D waves
// - [UTIL] SLP_Util_NormalizeMultiWaves()
//SLPA ver. ce20180212a.ipf
// - [UTIL] add SLP_Util_ShirleyGen to generate Shirley BG and subtract the BG (for XPS)
//SLPA ver. ce20180201a.ipf
// - [DXPS] Ask users for photon energy (hv) when loading the scan.
//SLPA ver. ce20180131b.ipf
// - [DXPS] Bug fixes on the BE/STV swap for Merged spectrum after changing Disp. Factor or (x0,y0)
// - [DXPS] Change default values
//SLPA ver. ce20180131a.ipf
// - [DXPS] Bug fixes on the overwriting exported waves.
//SLPA ver. ce20180130b.ipf
// - [DXPS] Initialize the selected dispersive line (vertical line in the middle)
//SLPA ver. ce20180130a.ipf
// - [DXPS] Ask whether user wants to overwrite the wave when exporting the plot
//SLPA ver. ce20180116a.ipf
// - [DXPS] Check whether the selected scan name is duplicated or not.
//SLPA ver. ce20171227a.ipf
// - [DXPS] Bug fix - Newly loaded scan is selected after the load finish.
//SLPA ver. ce20171030a.ipf
// - [DXPS] Bug fix - add the auto detection of STV start, STV step from .txt file in the DXPS scan.
//SLPA ver. ce20170920a.ipf
// - [IXPS] Bug fix - Extract LEEM Cutoff - previously MapVol size is only 1 layer and only collect the first parameter. Corrected now.
//SLPA ver. ce20170906d.ipf
// - [LL] Note field is now editable. Can make note for individual image
//SLPA ver. ce20170906c.ipf
// - [Util] Ask user to find SLP_Auger_W.ibw or SLP_BE_W.ibw if they have not been loaded to the current Igor folder.
//SLPA ver. ce20170906b.ipf
// - [DXPS] Add Auger data to peak assignment
// - [IXPS] Add Auger data to peak assignment
//SLPA ver. ce20170906a.ipf
// - [LL] Bug fix - Display preview image once the 'Preview' checkbox is clicked [ListBoxProx_LL_FileList]
//SLPA ver. ce20170904a.ipf
// - [DXPS] Bug fix - Peak assignment hook function.
//SLPA ver. ce20170816b.ipf
// - [IXPS] Draw ROI manually instead of using auto- screen mask creation
//SLPA ver. ce20170816a.ipf
// - [DXPS] SLP_DXPS_RestoreRawData - If the raw data has been moved, ask user to browse for it.
//SLPA ver. ce20170815b.ipf
// - [DXPS] Peak assignment function.
//SLPA ver. ce20170815a.ipf
// - [DXPS] BE/KE display for the combined spectrum. Export to BE or KE. Prompt for analyzer's WF if no input.
//SLPA ver. ce20170728a.ipf
// - [IXPS] Fix small bugs on peak assignment/BE display function (initialize new scans)
// - [IXPS] Warn when users try to use existing volume names (incl. names used by other SLP functions) during Load Scan..
//SLPA ver. ce20170713a.ipf
// - [IXPS] Peak assignment (using BE table)
//SLPA ver. ce20170707c.ipf
// - [IXPS] Export and plot z-profile (both KE and BE)
//SLPA ver. ce20170707a.ipf
// - [IXPS] Save z-profile cursor positions for each scan
// - [IXPS] Able to switch KE<->BE scale
//SLPA ver. ce20170707a.ipf
// - [IXPS] Bug fix - Delete all scans = ok (previously didn't actually delete raw data..)
//SLPA ver. ce20170706c.ipf
// - [IXPS] Automatically detect STV start, STV step when loading IXPS,DXPS,LEEDIV,LEEMIV
//SLPA ver. ce20170706b.ipf
// - [DLA] Bug fix - Don't display anything if there is no image loaded yet
// - [UTIL] LoadMultImg2Vol can now load either .tif and .TIFF for
// - [IXPS] Bug fix - Error when 'See z-profile' is checked when loading new volume.
//SLPA ver. ce20170706a.ipf
// - [DLA] Include Diffusion Limit Aggregation analysis (SLP_DLA_ce20170504d.ipf)
//SLPA ver. ce20170629a.ipf
// - [IXPS] Can use cursor to see different z-profile in different area. First use of 'hook' function in Igor.
//SLPA ver. ce20170627a.ipf
// - [IXPS] Add 'LEEM cut-off' mapping (for rel. WF measurement with LEEM).
//SLPA ver. ce20170607a.ipf
// - [IXPS] Can now adjust Isochromaticity mathematical function (displayed in SetVar controls)
//SLPA ver. ce20170606d.ipf
// - [IXPS] Use Inversed GLA instead (for KE scale)
//SLPA ver. ce20170606c.ipf
// - [IXPS] Add 4GLAs fit function
// - [IXPS] Small bug fix on display selected param. map (applied auto-intensity)
//SLPA ver. ce20170606b.ipf
// - [IXPS] Add 3GLAs fit function
//SLPA ver. ce20170606a.ipf
// - [IXPS] adjust LLim and ULim after loading
// - [IXPS] Bug fixes for the Display/selected image vs. histogram and auto intensity adjust
//SLPA ver. ce20170430b.ipf
// - [IXPS] Change to green color
//SLPA ver. ce20170430a.ipf
// - [IXPS] Copy fit coef. from another scan
//SLPA ver. ce20170429b.ipf
// - [IXPS] Update fit mask LLim and ULim variable with scan selection
// - [IXPS] Copy screen mask from another scan (with the same bin)
//SLPA ver. ce20170429a.ipf
// - [IXPS] 1GLA fit mode added
// - [IXPS] Hold functionality for keeping fit coef. constant
//SLPA ver. ce20170424a.ipf
// - [IXPS] Improve the auto range funtionality - use median then average MatrixFilter (avg works quite well with NaN)
//SLPA ver. ce20170424a.ipf
// - [IXPS]
// - Correc the Image selection function - should work properly now
// - Do a 'low pass filter' with MatrixFilter in the 'median' mode to remove speckles. The histogram looks much better this way.
// - Automatically set the Color min/max using the LPF'ed Map
// - Update the color min/max slider and color min/max update the ParamDisplayW
// - Clean up the DisplaySel function (call the SelectImage function instead of doing it by itself)
//SLPA ver. ce20170420a.ipf
// - [NEX] Load scans.. button is now load only one scan at a time. It also checks and corrects the scan name automatically.
// - [IXPS] Auto create correction (using 2d parabolic correction function)
//SLPA
// - Load_LEEMDAT_ce20170226a.ipf
// - SLP_NEXAFS_ce20170104a.ipf
// - DispXPS_Panel_ce20170302f.ipf
// - ImgXPS_Panel_ce20170321e.ipf
// - SLP_Util_ce20170226a.ipf
//ver. ce20170104a
// - Add SLP_Load_oldLEEM_Img() - Load old .DAT file from Elmitec LEEM (before 2014)
//ver. ce20161216a
// - Add image creation date/time in the param list
//ver. ce20161215c
// - Add Image notes
// - Some cosmetic changes
// - Bug fix on deleting many DataSet
//ver. ce20161215b
// - Delete dataset is available. It warns when some images are in used. Dataset won't be deleted in that case.
//ver. ce20161214a
// - Cross-hair in the Find screen dialog (only if the x-y scale is not set). Values of new x_center and y_center can be manually changed.
// - Change Plot single image button to Plot fullsize image (required that the data file is accessible). Plot single image still works with double clicking the image name in the list
//ver. ce20161210a
// - Stitch - ROI can be modified. Mask creation window also shows selected image behind the mask.
//ver. ce20161209a
// - Add functions to scale images, find screen position, and image stitching
// - Plot the displayed image w/ description legend
// - Export selected images to TIFF files in selected folder w/ a .csv file containing image details
//[from Stitch .ipf Ver. ce20161128a.ipf
// - Work with LoadLEEM .ipf
// - Set scale for selected images in the dataset. Scale can be pixel, relative or absolute (offset with Mitutoyo X,Y reading).
//Ver. ce20161207a.ipf
// - Stitching almost works. Need algorithm for some FOV adjustment (e.g. 75um FOV is not really
//ver. ce20161119a
// - Load images (.DAT) in batch. Read and store important LEEM/PEEM parameters from the header of the image file
//ver.ce20161123a
// - User interface
// - Load sets of image and automatically save the image set.
//ver.ce20161124a
// - Bug fixed - solve the problem when the some image number is missing. Change the search algorithm in the SLP_LL_setup function (now ver.2)
// - Record no. of images in the 4th column of DatasetListW
// - Cosmetic change to the image plot display
//ver. ce20161126a
// - New dataset selection and display automatically after loading
// - Default resize option is 0.25 and is kept afterward
// - Bug fixed - parameter display update
// - Dataset name suggestion using folder name
//ver. ce20161127a
// - Warn when users use duplicated dataset name
//ver. ce20161127b
// - Remove the 128 dataset limit. ImgSetListW size is increased with added datasets
// - use 'row=" in the ListBox selection so that the selection is always visible when switching between datasets
// - Prevent users from clicking outside the range in Image and DataSet listboxes
//ver. ce20161127c
// - Image/dataset selection with SelWave
// - Select all/select none buttons for image list
//ver. ce20161127d
// - Image ctab (colour/first colour/last colour)is retained for the next image selection. It is saved for the next time the program is run
//ver. ce20170226a
// - Add new image load panel. The multiple image loading is easier and more efficient.
// - Bug fix on the deleting datasets (the previous version doesn't use /TXOP=6 in the FindValue so the deletion had been wrong
/////////////////////////////////////
/////////////ARCHIVE/////////////////
/////////////////////////////////////
//CODE: DispXPSPanel
//Ver. ce20170301a
// - First working version
// - Data loaded and saved in separated folders (Raw data in one folder)
// - Adjust threshold and minimum disp. size (in pixels) to find a dispersive line automatically
// - Extract XPS spectra from different position in the disp. line (several param. can be selected in the panel)
// - Disp. factor and energy position can be calibrated in the panel
//Ver. ce20170301b
// - Can now choose Disp. line and subsequent P. lines gen. param. from another scan (helps when measuring low S/N scans, or Ef)
// - Can correct the first frame which sometimes has unusually high intensity (by copying the second frame onto it - losing 1 data point).
//Ver. ce20170301c
// - Can remove the raw data to reduce the project file size.
// - Small code clean-up
//Ver. ce20170301d
// - Can restore raw data for re-processing
//Ver. ce20170302a
// - Small bug fixes (control toggling when scan has/has no raw data
// - Select all/select none buttons
//Ver. ce20170302b
// - Export and plot results (combined spectrum only)
//Ver. ce20170302c
// - Add Scan Note (all the parameters used in the data extraction) to the exported wave
//Ver. ce20170302d
// - Bug fixed: Error when trying to adjust Disp. Factor/x0/y0 w/o raw data (removed a wave refrence to the raw data)
// - Bug fixed: Copy dispersive line from.. button -> Error conditioning with V_Flag (Continue -> V_Flag=0)
// - Bug fixed: NLines is not stored in the ScanListW! -> Fixed
// - Check ScanName and make suggestions for users to conform to Standard Wave Name. [CODE: SLP_Util_WNameCheck], [CODE: SLP_Util_WNameSuggest]
//Ver. ce20170302e
// - Manual edit of the disp. line
//Ver. ce20170302f
// - Cosmetic change - panel colour = blue
//[POS]IXPS Begin
//CODE: ImgXPSPanel
//
// Ver.ce20170310c
// - Almost working - Ver. 0.7
// - Can Load and display image volume w/ slider
// - Automatic screen mask creation
// - Loop data fitting for (binned) each pixel
// - Extraction progress (in %)
// - Load correction waves from DataBrowser window
// - Correction fine-adjustment (x,y,magnitude)
// Ver.ce20170311a
// - ListBoxProc for DisplayListW
// - ListBoxProc for XPS param ListW
// Ver.ce20170311b
// - Auto color scale/int. for the image volume/maps
// - Some fix on using the ScanList ListBox
// - properly show ImgVol or IntgImg depending on whether there is raw data stored in the project
// Ver.ce20170311d
// - Can now use slider to adjust color scale
// - Radio button to select which Image to adjust the color scale
// - Use STRUCT of the checkbox control.
// Ver.ce20170312a
// - Export/display maps
// - Still with some bugs
// - Can still extract only the cutoff (w/ ERF fit) for WF measurements
// Ver. ce20170312b
// - First working version - Ver. 1.0
// - Many bug fixes..
// Ver. ce20170317a
// - Small bug fix (automatically select newly loaded Scans, display fitted curve)
// Ver. ce20170321b
// - Can now select which fitting mode to use (2 modes - Secondary Yield Cut-off for WF measurements, and 2GLAs for isochromaticity map)
// - 'Fast Extraction' mode (much faster with /N=1 in FuncFit)
// Ver. ce20170321c
// - Adjust Threshold for finding screen
// Ver. ce20170321d
// - Clean up the windows. Move graph and control positions.
// Ver. ce20170321e
// - Init check. Bug fixes (not 100% yet)
//Igor procedure to assist BL3.2Ub operation and data analyses
//ver. ce20161031a
// - Can load, draw line, change line profile width, and plot profile and intensity vs. time plot
// - Still very buggy
//ver. ce20161107b
// - Initialize program (creating Package waves, global variables, etc.)
// - Plotting the result
// - Label and formatting graph
// - Stored and display previous image series
// - Updating line profiles with line profile width
// - Remove old line profile (bottom graph)
//ver. ce20161111a
// - Keep raw images and line profiles in separated folders
//ver. ce20170226a
// - Change name to SLP_XPS
// - Merge SLP_WF_ce20170208a.ipf (WF mapping)
// - Merge SLP_CreateDispLines_ce20170214a.ipf (Automatic dispersion line finding and multiple-point data collection for XPS)
//Current ver. ce20161114a
// Todos
// - New DataSet system (from SLP_LoadLEEM)
// - Filter for file loading (e.g. *.TIF)
// - Option to load .DAT and extract data
// - Auto calculation of dispersion (eV/pixel)
// - Show line profile width
// - Delete raw data (to save disk space)
// - Clean up the code
/////////////////////////////////////
/////////////TODOs/////////////////
/////////////////////////////////////
// [LEED-IV]
// - Extract IV curves from LEEM's LEED
// [UTIL]
// - Sine Sound wave should be put inside UTIL folder
// - W_StatsQuantiles should be put inside UTIL folder
// - Project creation
// - Auto detect/index new data
// - Auto update??
// - Report creation assist - Report panel
// [LoadLEEM]
// + Functionality
// - ***Make notes for individual images [to be used for Report Making feature]
// - **Report making
// - Record time when images have been captured
// + Bug fixes
// - Editable note column for images and dataset
// - Load TIFF&other file types as well
// - Should be able to distinguish the LEED/Disp. mode and prevent program from interrupting the processes
// - Error when all datasets are deleted
// - FOV name table <-> FOV variable
// [NEXAFS]
// - Option to load existing wave instead of from .txt file (e.g. z-profile waves extracted from [ImgXPS]
// - Fit and Global fit
// - Report creation - export to LaTeX
// - Rescale selected graph button
// - Clear all graph selections button
// - Memorise recipe parameter values
// [ImgXPS]
// - Put data in 'ImgXPS' folder
// - LPF image should be put in ImgXPS folder
// - Warn when user don't enter FOV
// - Volume data pre-processing - [z-wave] Normalize, subtraction, and [xy wave] Isochromaticity correction, brightness correction before extraction
// + Additional features *
// - Th. adj. for screen mask creation
// - Error report when scrn. msk. creation is not successful
// - Coef. real-time display for curve fitting
// - Est. time for extraction
// - Quick ext. mode (no fit display)
// - Error marking for bad fit.
// [DispXPS]
// - Export
// - Show the notes in the label instead of wavename
// - Export to GLAFit
// - Use 'absolute' scale (in ref. to the MCP screen size).
// Bug fixes
// - Axis label disappears for both indv. and cmbn. plots
// - Disp. and P. lines display is not correct sometimes.
// [DLA]
// - Bug fixes - duplicate Voronoi cell
// - Manually movable/editable/addable island centers
//MENU BAR
Menu "SLPA"
"Launcher..",SLP_Util_CreateLauncher_small()
"Load LEEM images..",SLP_LL_CreatePanel01()
"Load NEXAFS scans..",SLP_NEX_CreatePanel()
"Imaging XPS..",SLP_IXPS_CreatePanel1()
"Dispersive XPS..",SLP_DXPS_CreatePanel1()
"DLA analysis..",SLP_DLA_CreatePanel01()
"Multi-GLAs Fit..",SLP_MGFit_CreatePanel()
End
///////////////
//UTILITY BELT
///////////////
Function SLP_Util_PanelColorScale()
DoWindow /K SLP_ColorScalePanel
NewPanel /W=(130,90,610,215) /N=SLP_ColorScalePanel
NVAR SetValue_Min=root:Package_SLP:Util:CScale:SetValue_Min
NVAR SetValue_Max=root:Package_SLP:Util:CScale:SetValue_Max
NVAR MinValue=root:Package_SLP:Util:CScale:MinValue
NVAR MaxValue=root:Package_SLP:Util:CScale:MaxValue
NVAR Rev_Flg=root:Package_SLP:Util:CScale:Rev_Flg
SVAR ColorTable=root:Package_SLP:Util:CScale:ColorTable
String ImageName=Stringfromlist(0,ImageNameList("",";"))
Wave ImgW=ImageNameToWaveRef("",ImageName)
ImageStats /Q ImgW
MinValue=V_Min
MaxValue=V_Max
String ImgInfo=ImageInfo("",ImageName,0)
String ImgCtab=StringByKey("RECREATION",ImgInfo)
String ImgColor=ImgCtab[7,strlen(ImgCtab)-2]
SetValue_Min=str2num(StringFromList(0,ImgColor,","))
SetValue_Max=str2num(StringFromList(1,ImgColor,","))
Variable Button_X=300
Variable Button_XSize=75
Variable Button_Y=35
Button Button_AutoScale,pos={Button_X,Button_Y},size={Button_XSize,20}, Fsize=10,title="Auto Scale",proc=ButtonProc_Util_ColorScalePanel
Button Button_AutoRange,pos={Button_X,Button_Y+20},size={Button_XSize,20}, Fsize=10,title="Auto Range",proc=ButtonProc_Util_ColorScalePanel
Button Button_Range,pos={Button_X,Button_Y+40},size={Button_XSize,20}, Fsize=10,title="Range..",proc=ButtonProc_Util_ColorScalePanel
Button Button_Done,pos={Button_X,Button_Y+60},size={Button_XSize,20}, Fsize=10,title="Done",proc=ButtonProc_Util_ColorScalePanel
DrawText 5,20,"\Z12Adjust colour scale"
DrawText 5,40,"Min:"
DrawText 5,90,"Max:"
Slider Slider_MinValue,pos={35,25},size={240,30}, title="Min value",vert=0,limits={MinValue,MaxValue,0.01},proc=SliderProc_Util_ColorScale,ticks=20,variable=SetValue_Min
Slider Slider_MaxValue,pos={35,75},size={240,30}, title="Max value",vert=0,limits={MinValue,MaxValue,0.01},proc=SliderProc_Util_ColorScale,ticks=20,variable=SetValue_Max
PopupMenu popup_CtabList,pos={119,4},size={200,20},proc=PopMenuProc_Util_ColorScale
PopupMenu popup_CtabList,mode=4,value= #"\"*COLORTABLEPOP*\""
CheckBox check_Reverse,pos={325,7},size={52,15},proc=CheckProc_Util_RevFlg,title="Reverse"
CheckBox check_Reverse,value= 0
Button Button_DefaultScale,pos={Button_X+85,Button_Y+20},size={75,20},proc=ButtonProc_Util_ColorScalePanel,title="Set to default"
Button Button_DefaultScale,fSize=10
Button Button_SetAsDefault,pos={Button_X+85,Button_Y+40},size={75,20},proc=ButtonProc_Util_ColorScalePanel,title="Set as default"
Button Button_SetAsDefault,fSize=10
Button Button_SetDefault,pos={Button_X+85,Button_Y+60},size={75,20},proc=ButtonProc_Util_ColorScalePanel,title="Set default.."
Button Button_SetDefault,fSize=10
DrawText 381,50,"Default"
SetDrawEnv fillpat= 0
DrawRect 380,51,463,117
//ModifyImage /W=Cutoff $ImageName ctab= {SetValue_Min,SetValue_Max,Rainbow,0}
End
Function PopMenuProc_Util_ColorScale(pa) : PopupMenuControl
STRUCT WMPopupAction &pa
switch( pa.eventCode )
case 2: // mouse up
Variable popNum = pa.popNum
String popStr = pa.popStr
String ImageName=Stringfromlist(0,ImageNameList("",";"))
ControlInfo /W=SLP_ColorScalePanel check_Reverse
Variable Rev_Flg=V_Value
ModifyImage $ImageName ctab= {,,$popStr,Rev_Flg}
SVAR ColorTable=root:Package_SLP:Util:CScale:ColorTable
ColorTable=popStr
break
case -1: // control being killed
break
endswitch
return 0
End
Function CheckProc_Util_RevFlg(cba) : CheckBoxControl
STRUCT WMCheckboxAction &cba
switch( cba.eventCode )
case 2: // mouse up
Variable checked = cba.checked
NVAR Rev_Flg=root:Package_SLP:Util:CScale:Rev_Flg
Rev_Flg=checked
String ImageName=Stringfromlist(0,ImageNameList("",";"))
ModifyImage $ImageName ctab= {,,,Rev_Flg}
break
case -1: // control being killed
break
endswitch
return 0
End
Function ButtonProc_Util_ColorScalePanel(ba) : ButtonControl
STRUCT WMButtonAction &ba
String ImageName
String ImgW_FName
Variable ImgMedian,ImgQ25,ImgQ75
NVAR MinValue=root:Package_SLP:Util:CScale:MinValue
NVAR MaxValue=root:Package_SLP:Util:CScale:MaxValue
NVAR SetValue_Min=root:Package_SLP:Util:CScale:SetValue_Min
NVAR SetValue_Max=root:Package_SLP:Util:CScale:SetValue_Max
NVAR SetValueMin_Default=root:Package_SLP:Util:CScale:SetValueMin_Default
NVAR SetValueMax_Default=root:Package_SLP:Util:CScale:SetValueMax_Default
NVAR Rev_Flg_Default=root:Package_SLP:Util:CScale:Rev_Flg_Default
SVAR ColorTable=root:Package_SLP:Util:CScale:ColorTable
NVAR Rev_Flg=root:Package_SLP:Util:CScale:Rev_Flg
switch( ba.eventCode )
case 2: // mouse up
// click code here
StrSwitch (ba.CtrlName)
case "button_Done":
DoWindow/K SLP_ColorScalePanel
break
case "Button_Range":
ImageName=Stringfromlist(0,ImageNameList("",";"))
Wave ImgW=ImageNameToWaveRef("",ImageName)
ImgW_FName=GetWavesDataFolder(ImgW,1)+NameofWave(ImgW)
ControlInfo Slider_MinValue
Variable MinValue_prompt=MinValue
Variable MaxValue_prompt=MaxValue
Prompt MinValue_prompt,"Minimum intensity"
Prompt MaxValue_prompt,"Maximum intensity"
DoPrompt "Enter parameters",MinValue_prompt,MaxValue_prompt
If (V_Flag==0)
MinValue=MinValue_Prompt
MaxValue=MaxValue_Prompt
Slider Slider_MinValue,limits={MinValue,MaxValue,(MaxValue-MinValue)/200}
Slider Slider_MaxValue,limits={MinValue,MaxValue,(MaxValue-MinValue)/200}
EndIF
break
case "Button_AutoRange":
ImageName=Stringfromlist(0,ImageNameList("",";"))
Wave ImgW=ImageNameToWaveRef("",ImageName)
ImgW_FName=GetWavesDataFolder(ImgW,1)+NameofWave(ImgW)
ImgMedian=SLP_Util_FindImgMedian(ImgW_FName,0)
ImgQ25=SLP_Util_FindImgMedian(ImgW_FName,1)
ImgQ75=SLP_Util_FindImgMedian(ImgW_FName,2)
MaxValue=ImgMedian+(ImgQ75-ImgMedian)*2
MinValue=ImgMedian-(ImgMedian-ImgQ25)*2
Slider Slider_MinValue,limits={MinValue,MaxValue,(MaxValue-MinValue)/200}
Slider Slider_MaxValue,limits={MinValue,MaxValue,(MaxValue-MinValue)/200}
break
case "Button_AutoScale":
ImageName=Stringfromlist(0,ImageNameList("",";"))
Wave ImgW=ImageNameToWaveRef("",ImageName)
ImgW_FName=GetWavesDataFolder(ImgW,1)+NameofWave(ImgW)
ImgQ25=SLP_Util_FindImgMedian(ImgW_FName,1)
ImgQ75=SLP_Util_FindImgMedian(ImgW_FName,2)
ModifyImage $ImageName ctab= {ImgQ25,ImgQ75,$ColorTable,Rev_Flg}
SetValue_Min=ImgQ25
SetValue_Max=ImgQ75
break
case "Button_DefaultScale": //Use default setting
ImageName=Stringfromlist(0,ImageNameList("",";"))
SetValue_Min=SetValueMin_Default
SetValue_Max=SetValueMax_Default
Rev_flg=Rev_Flg_Default
ModifyImage $ImageName ctab= {SetValue_Min,SetValue_Max,$ColorTable,Rev_flg}
CheckBox check_Reverse win=SLP_ColorScalePanel,value=Rev_flg
break
case "Button_SetAsDefault": //Set current values as default
ImageName=Stringfromlist(0,ImageNameList("",";"))
SetValueMin_Default=SetValue_Min
SetValueMax_Default=SetValue_Max
Rev_Flg_Default=Rev_Flg
break
case "Button_SetDefault": //Enter default values (prompt)
Variable Min_DefaultPrompt=SetValueMin_Default
Variable Max_DefaultPrompt=SetValueMax_Default
String Rev_Flg_txt
If (Rev_Flg_Default==0)
Rev_Flg_txt="no"
Else
Rev_Flg_txt="yes"
EndIf
Prompt Min_DefaultPrompt "Default minimum"
Prompt Max_DefaultPrompt "Default maximum"
Prompt Rev_Flg_Txt,"Reverse color",popup,"yes;no"
DoPrompt "Enter parameters", Min_DefaultPrompt,Max_DefaultPrompt,Rev_Flg_Txt
If (V_Flag==0) //User clicks 'Continue'
SetValueMin_Default=Min_DefaultPrompt
SetValueMax_Default=Max_DefaultPrompt
Rev_Flg_Default=stringmatch(Rev_Flg_Txt,"yes") //Flag for reverse color
EndIF
break
EndSwitch
break
case -1: // control being killed
break
endswitch
return 0
End
Function SliderProc_Util_ColorScale(sa) : SliderControl
STRUCT WMSliderAction &sa
NVAR SetValue_Min=root:Package_SLP:Util:CScale:SetValue_Min
NVAR SetValue_Max=root:Package_SLP:Util:CScale:SetValue_Max
switch( sa.eventCode )
case -1: // control being killed
break
default:
if( sa.eventCode & 1 ) // value set
Variable curval = sa.curval
If (stringmatch(sa.CtrlName,"Slider_MinValue"))
SetValue_Min=curval
ElseIf (stringmatch(sa.CtrlName,"Slider_MaxValue"))
SetValue_Max=curval
EndIf
String ImageName=Stringfromlist(0,ImageNameList("",";"))
ControlInfo /W=SLP_ColorScalePanel check_Reverse
Variable Rev_Flg=V_Value
ModifyImage $ImageName ctab= {SetValue_Min,SetValue_Max,,Rev_Flg}
endif
break
endswitch
return 0
End
Function SLP_Util_FindImgMedian(ImgW_FName,OptFlg)
//Find median without NaN
String ImgW_FName
Variable OptFlg //0=median,1=Q25,2=Q75
Wave ImgW=$ImgW_FName
variable i=1
variable centerP=floor(dimsize(ImgW,0)/2)
variable centerQ=floor(dimsize(ImgW,0)/2)
variable ImgMedianInt_tmp=0
variable ImgMedianInt=0
//Start from small area in the middle. Expand until NaN is found
Do
ImgMedianInt=ImgMedianInt_tmp
Duplicate /O/R=[centerP-i,centerP+i][centerQ-i,centerQ+i] ImgW,SmImgW
ImgMedianInt_tmp=statsmedian(SmImgW)
i+=1
While (i<dimsize(ImgW,0)/2&&numtype(ImgMedianInt_tmp)==0)
StatsQuantiles /Q SmImgW
Killwaves SmImgW
Variable Result=0
switch(OptFlg) // numeric switch
case 0: // execute if case matches expression
Result=ImgMedianInt
break // exit from switch
case 1: // execute if case matches expression
Result=V_Q25
break
case 2: // execute if case matches expression
Result=V_Q75
break
endswitch
Return Result
End
Function ButtonProc_Util_FindCutOff(ba) : ButtonControl
STRUCT WMButtonAction &ba
switch( ba.eventCode )
case 2: // mouse up
// click code here
string TraceList=TracenameList("",";",1)
String TraceName=""
prompt TraceName,"Trace to find ERF cutoff",popup,TraceList
DoPrompt "Select trace",TraceName
If (V_Flag==0) //User clicks 'Continue'
Wave DataW=TraceNameToWaveRef("",Tracename)
//display DataW
String DataW_Name= NameofWave(DataW)
String DataW_FName= GetWavesDataFolder(DataW,1)+DataW_Name
SLP_Util_FindCutoff(DataW_FName,1)
EndIF
break
case -1: // control being killed
break
endswitch
return 0
End
Function ButtonProc_Util_Launch(ba) : ButtonControl
STRUCT WMButtonAction &ba
switch( ba.eventCode )
case 2: // mouse up
// click code here
strswitch (ba.ctrlName) //Name of the image (note the use of WMCheckBoxAction STRUCT)
case "button_LEEMImage":
SLP_LL_CreatePanel01()
break
case "button_ImgXPS":
SLP_IXPS_CreatePanel1()
break
case "button_DispXPS":
SLP_DXPS_CreatePanel1()
break
case "button_NEX":
SLP_NEX_CreatePanel()
break
case "button_DLA":
SLP_DLA_CreatePanel01()
break
case "button_MGFit":
SLP_MGFit_CreatePanel()
break
case "button_Util":
NVAR Launcher_expand=root:Package_SLP:Util:Launcher_expand
If (Launcher_expand)
SLP_Util_CreateLauncher_small()
Else
SLP_Util_CreateLauncher()
EndIf
break
case "button_Done":
DoWindow/K SLP_Launcher
break
EndSwitch
break
case -1: // control being killed
break
endswitch
return 0
End
Function SLP_Util_CreateLauncher() : Panel
Dowindow /K SLP_Launcher
PauseUpdate; Silent 1 // building window...
NewPanel /W=(100,49,852,417) /N=SLP_Launcher
ModifyPanel fixedSize=1
SetDrawLayer UserBack
SetDrawEnv fsize= 18
DrawText 14,30,"SLRI LEEM PEEM Analysis"
SetDrawEnv fsize= 14
DrawText 12,52,"Launcher"
SetDrawEnv fsize= 30
DrawText 659,361,"SLPA"
SetDrawEnv fillpat= 0
DrawRect 230,32,739,359
Button button_LEEMImage,pos={12,57},size={102,64},proc=ButtonProc_Util_Launch,title="LEEM image"
Button button_Done,pos={11,339},size={50,20},title="done",proc=ButtonProc_Util_Launch
Button button_ImgXPS,pos={120,57},size={102,64},proc=ButtonProc_Util_Launch,title="Imaging XPS",fColor=(26205,52428,1)
Button button_DispXPS,pos={12,125},size={102,64},proc=ButtonProc_Util_Launch,title="Dispersive XPS",fColor=(0,43690,65535)
Button button_NEX,pos={120,126},size={102,64},proc=ButtonProc_Util_Launch,title="NEXAFS"
Button button_DLA,pos={13,192},size={102,64},proc=ButtonProc_Util_Launch,title="DLA analysis"
Button button_MGFit,pos={121,192},size={102,64},proc=ButtonProc_Util_Launch,title="Multi GLAs fit"
Button button_Util,pos={121,262},size={102,64},title="Utility",proc=ButtonProc_Util_Launch
TabControl tab1,pos={238,4},size={430,21},tabLabel(0)="Graph"
TabControl tab1,tabLabel(1)="Color scale",tabLabel(2)="Report",tabLabel(3)="Log"
TabControl tab1,tabLabel(4)="XPS tools",value= 0,disable=2
Button button_FindCutoff,pos={248,44},size={100,20},proc=ButtonProc_Util_FindCutOff,title="Find ERF cutoff",fSize=10
Button button_MakeRainbow,pos={247,68},size={100,20},proc=ButtonProc_Util_TraceColors,title="Make rainbow",fSize=10
Button button_MakeRedgradient,pos={247,94},size={100,20},proc=ButtonProc_Util_TraceColors,title="Make red gradient",fSize=10
Button button_ColorScale,pos={247,124},size={100,20},proc=ButtonProc_Util_TraceColors,title="Change color scale",fSize=10
Button button_ObjStv,pos={247,164},size={100,20},proc=ButtonProc_Util_TraceColors,title="Find OBJ vs STV",fSize=10
Button button_OffsetZ,pos={247,197},size={100,20},proc=ButtonProc_Util_TraceColors,title="Offset intensity",fSize=10
SetDrawEnv fsize=10;DrawText 351,61,"Find location of photoemission cut-off when doing workfunction measurement"
SetDrawEnv fsize=10;DrawText 351,90,"Change trace colors in multi-trace graph to rainbow"
SetDrawEnv fsize=10;DrawText 351,120,"Change trace colors in multi-trace graph to red with different shades"
SetDrawEnv fsize=10;DrawText 351,150,"For 2D image plot. Can change the scale automatically based on median value"
SetDrawEnv fsize=10;DrawText 355,180,"Find relationship between Objective lens and Start Voltage"
SetDrawEnv fsize=10;DrawText 355,212,"Offset intensity level of background to equalize and compare 2D maps"
NVAR Launcher_expand=root:Package_SLP:Util:Launcher_expand
Launcher_expand=1
End
Function SLP_Util_CreateLauncher_small() : Panel
If (!DatafolderExists("root:Package_SLP:Util"))
SLP_Util_Init()
EndIf
PauseUpdate; Silent 1 // building window...
Dowindow /K SLP_Launcher
NewPanel /W=(100,49,332,419) /N=SLP_Launcher
ModifyPanel fixedSize=1
SetDrawLayer UserBack
SetDrawEnv fsize= 18
DrawText 14,30,"SLRI LEEM PEEM Analysis"
SetDrawEnv fsize= 14
DrawText 12,52,"Launcher"
SetDrawEnv fsize= 30
DrawText 146,367,"SLPA"
Button button_LEEMImage,pos={12,57},size={102,64},proc=ButtonProc_Util_Launch,title="LEEM image"
Button button_Done,pos={11,339},size={50,20},title="done",proc=ButtonProc_Util_Launch
Button button_ImgXPS,pos={120,57},size={102,64},proc=ButtonProc_Util_Launch,title="Imaging XPS"
Button button_ImgXPS,fColor=(26205,52428,1)
Button button_DispXPS,pos={12,125},size={102,64},proc=ButtonProc_Util_Launch,title="Dispersive XPS"
Button button_DispXPS,fColor=(0,43690,65535)
Button button_NEX,pos={120,126},size={102,64},proc=ButtonProc_Util_Launch,title="NEXAFS"
Button button_DLA,pos={13,192},size={102,64},proc=ButtonProc_Util_Launch,title="DLA analysis"
Button button_MGFit,pos={121,192},size={102,64},proc=ButtonProc_Util_Launch,title="Multi GLAs fit"
Button button_Util,pos={121,262},size={102,64},title="Utility",proc=ButtonProc_Util_Launch
NVAR Launcher_expand=root:Package_SLP:Util:Launcher_expand
Launcher_expand=0
End
Function ButtonProc_Util_TraceColors(ba) : ButtonControl
STRUCT WMButtonAction &ba
switch( ba.eventCode )
case 2: // mouse up
// click code here
strswitch (ba.ctrlName) //Name of the image (note the use of WMCheckBoxAction STRUCT)
case "button_MakeRainbow":
SLP_Util_MakeRainbow()
break
case "button_MakeRedGradient":
SLP_Util_MakeRedGradient("")
break
case "button_ColorScale":
SLP_Util_PanelColorScale()
break
case "button_ObjStv":
SLP_Util_PanelObjStv()
break
case "button_OffsetZ":