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List assemblies #206

Merged
merged 4 commits into from
May 14, 2020
Merged

List assemblies #206

merged 4 commits into from
May 14, 2020

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eweitz
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@eweitz eweitz commented May 14, 2020

This adds a script to write a TSV file of high-quality genome assemblies by organism.

Output file has one row per assembly, with columns for:

  • Organism scientific name (e.g. Homo sapiens, Macaca fascicularis)
  • Organism common name (e.g. human, crab-eating macaque)
  • Assembly name (e.g. GRCh38, Macaca_fascicularis_5.0)
  • Assembly accession (e.g. GCA_000001405.28, GCA_000364345.1)

Example call:

python3 list_assemblies.py

@coveralls
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Coverage Status

Coverage decreased (-12.4%) to 78.048% when pulling 1859852 on assemblies-list into 77c4e32 on master.

@eweitz eweitz merged commit 1fd0244 into master May 14, 2020
@eweitz eweitz deleted the assemblies-list branch June 14, 2020 23:18
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2 participants