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bbmap module - KeyError #1556

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OXB-DC opened this issue Sep 30, 2021 · 1 comment
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bbmap module - KeyError #1556

OXB-DC opened this issue Sep 30, 2021 · 1 comment
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bug: module Bug in a MultiQC module

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@OXB-DC
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OXB-DC commented Sep 30, 2021

Oops! The 'bbmap' MultiQC module broke... ──────────────────╮
│ Please copy this log and report it at                                        │
│ https://github.com/ewels/MultiQC/issues                                      │
│ Please attach a file that triggers the error. The last file found was:       │
│ ./fastq/adapter_stats/mRNA_OXBv19_S19_adapter_stats.txt                      │
│                                                                              │
│ Traceback (most recent call last):                                           │
│   File "/opt/anaconda3/envs/multiqc/lib/python3.6/site-packages/multiqc/mult │
│     output = mod()                                                           │
│   File "/opt/anaconda3/envs/multiqc/lib/python3.6/site-packages/multiqc/modu │
│     if self.parse_logs(file_type, **f):                                      │
│   File "/opt/anaconda3/envs/multiqc/lib/python3.6/site-packages/multiqc/modu │
│     if line != cols + list(log_descr["extracols"].keys()):                   │
│ KeyError: 'extracols'      

problem_file.zip

@ewels ewels added the bug: module Bug in a MultiQC module label Nov 9, 2021
ewels added a commit to MultiQC/test-data that referenced this issue Jan 27, 2022
@ewels ewels closed this as completed in 9ace57a Jan 27, 2022
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ewels commented Jan 27, 2022

Thanks for reporting this @oxb-github - should hopefully be fixed in 9ace57a

vladsavelyev pushed a commit to vladsavelyev/MultiQC_TestData that referenced this issue Apr 16, 2022
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bug: module Bug in a MultiQC module
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