Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Remove empty bcftools stats variant depths plot #1777

Merged
merged 3 commits into from Oct 10, 2022

Conversation

SusiJo
Copy link
Contributor

@SusiJo SusiJo commented Oct 10, 2022

The module bcftools stats would show empty variant depth plots if no data was there, but an extra line with a sample name. This can happen when there is no INFO/DP field in a vcf file. So this PR should solve the issue and avoid showing an empty plot in the MultiQC report.

  • This comment contains a description of changes (with reason)
  • CHANGELOG.md has been updated

Copy link
Member

@ewels ewels left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Great! Just moving the changelog entry, then it looks good to merge.

Phil

Copy link
Member

@ewels ewels left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Great stuff, thanks!

@ewels ewels merged commit b936a7a into MultiQC:master Oct 10, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

2 participants