This repository has been archived by the owner on Apr 11, 2023. It is now read-only.
- Salmon - New module!
- Written by @darogan
- Software versions now explicitly cleaned and printed to logs for all tools.
- Final summary e-mails list versions at bottom.
- New MultiQC module parses these, plus more.
- Launch logfile
cf_[pipeline_id]_submissionlog.txtnow lists environment information- Prints loaded environment modules, current
PATH, user and system information
- Prints loaded environment modules, current
- Made use of
$RealBininstead of$Bin- Cluster Flow now works when the main
cfexecutable is symlinked
- Cluster Flow now works when the main
- Additional optional trimming parameters for TrimGalore! module
- Entirely new section of documentation describing module parameters
- Fixed a bug in parsing command line merge regexes.
- picard_dedup uses the environment
TMPDIRif available - Increased memory requirement for BWA alignment module.
- Many minor bugfixes