phyluce v1.7.3 #27
Workflow file for this run
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| name: Packaging | |
| on: | |
| release: | |
| types: [published] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| dependencies: | |
| name: Make conda environment file | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, macos-latest] | |
| # If we set the default shell here, it catches the activated conda | |
| # and we don't need to keep calling it. | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Check out Git repository | |
| uses: actions/checkout@v2 | |
| # setup cache for conda files | |
| - name: Cache conda packages | |
| uses: actions/cache@v1 | |
| env: | |
| # Increase this value to reset cache if | |
| # etc/example-environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{hashFiles('etc/phyluce-testing-environment.yml') }} | |
| # we'll use the handy conda incubator miniconda package | |
| - name: Set miniconda up | |
| uses: conda-incubator/setup-miniconda@v2.0.1 | |
| with: | |
| auto-update-conda: true | |
| python-version: 3.6 | |
| environment-file: etc/phyluce-testing-environment.yml | |
| - name: Create environment variables for output | |
| run: | | |
| VERSION=$(python setup.py --version) | |
| echo "phyluce_outf=distrib/phyluce-${VERSION}-py36-${{ runner.os }}-conda.yml" >> $GITHUB_ENV | |
| echo "phyluce_ver=$VERSION" >> $GITHUB_ENV | |
| # echo ${{ github.event.release.tag_name }} >> distrib/linux.yml | |
| - name: Add environment to file and commit | |
| run: | | |
| mkdir -p distrib | |
| conda env export --no-builds | grep -v "^channels:" | grep -v "^name: " | grep -v "^prefix: " > temp-environment.yml | |
| echo "# `date`" > ${{ env.phyluce_outf }} | |
| echo "channels:" >> ${{ env.phyluce_outf }} | |
| cat temp-environment.yml >> ${{ env.phyluce_outf }} | |
| rm temp-environment.yml | |
| echo " - phyluce=${{ env.phyluce_ver }}" >> ${{ env.phyluce_outf }} | |
| git config user.name github-actions | |
| git config user.email github-actions@github.com | |
| git pull origin main | |
| git checkout main | |
| git add . | |
| git commit -m "Auto-updating dependency files" | |
| git push origin main | |
| build-package: | |
| name: Build conda package | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-20.04, macos-latest] | |
| # If we set the default shell here, it catches the activated conda | |
| # and we don't need to keep calling it. | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Check out Git repository | |
| uses: actions/checkout@v2 | |
| - name: Set miniconda up | |
| uses: conda-incubator/setup-miniconda@v2.0.1 | |
| with: | |
| auto-update-conda: true | |
| python-version: 3.6 | |
| - name: Install conda build tools | |
| run: | | |
| conda install conda-build anaconda-client | |
| - name: Build phyluce | |
| run: | | |
| cd conda | |
| conda build phyluce --token ${{ secrets.ANACONDA_TOKEN }} --label phyluce | |
| build-docker: | |
| name: Build docker image | |
| needs: [dependencies, build-package] | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Prepare | |
| id: prep | |
| run: | | |
| echo "PHYLUCE_VERSION=$(python setup.py --version)" >> $GITHUB_ENV | |
| DOCKER_IMAGE=fairclothlab/phyluce | |
| VERSION=$(python setup.py --version) | |
| TAGS="${DOCKER_IMAGE}:${VERSION},${DOCKER_IMAGE}:latest" | |
| if [ "${{ github.event_name }}" = "push" ]; then | |
| TAGS="$TAGS,${DOCKER_IMAGE}:sha-${GITHUB_SHA::8}" | |
| fi | |
| echo ::set-output name=version::${VERSION} | |
| echo ::set-output name=tags::${TAGS} | |
| echo ::set-output name=created::$(date -u +'%Y-%m-%dT%H:%M:%SZ') | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v1 | |
| - name: Login to DockerHub | |
| if: github.event_name != 'pull_request' | |
| uses: docker/login-action@v1 | |
| with: | |
| username: ${{ secrets.DOCKER_USERNAME }} | |
| password: ${{ secrets.DOCKER_PASSWORD }} | |
| - name: Build and push | |
| uses: docker/build-push-action@v2 | |
| with: | |
| context: . | |
| file: docker/Dockerfile | |
| build-args: PHYLUCE_VERSION=${{ env.PHYLUCE_VERSION }} | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.prep.outputs.tags }} | |
| labels: | | |
| org.opencontainers.image.source=${{ github.event.repository.html_url }} | |
| org.opencontainers.image.created=${{ steps.prep.outputs.created }} | |
| org.opencontainers.image.revision=${{ github.sha }} |