mBin v1.1.1

Changes

• Fixed issue #6
• Added test cases

Citation

Beaulaurier J, Zhu S, Deikus G, Mogno I, Zhang XS, Davis-Richardson A, Canepa R, Triplett E, Faith J, Sebra R, Schadt EE, Fang G. Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation. Nature Biotechnology 36, 61-69 (2018).

Legal

This release is covered by the Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) License. More details can be found in the LICENSE file.

mBin v1.1

Changes

• Added support for current PacBio BAM format of alignments (legacy *.cmp.h5 still supported)
• Improved usage instructions
• Added test data

Citation

Beaulaurier J, Zhu S, Deikus G, Mogno I, Zhang XS, Davis-Richardson A, Canepa R, Triplett E, Faith J, Sebra R, Schadt EE, Fang G. Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation. Nature Biotechnology 36, 61-69 (2018).

Legal

This release is covered by the Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) License. More details can be found in the LICENSE file.

mBin v1.0

These are release notes for v1.0 of the mBin pipeline for DNA methylation analysis of metagenomic SMRT sequencing data. mBin is designed to take advantage of cell-wide DNA methylation patterns in bacteria for binning chromosomal contigs and extrachromosomal mobile genetic elements.

Citation

Beaulaurier J, Zhu S, Deikus G, Mogno I, Zhang XS, Davis-Richardson A, Canepa R, Triplett E, Faith J, Sebra R, Schadt EE, Fang G. Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation. Nature Biotechnology 36, 61-69 (2018).

Legal

This release is covered by the Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) License. More details can be found in the LICENSE file.