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Single-cell preprocessing pipelines, such as converting raw bcl files, make fastqs and then generating quantified matrix, etc

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fanzhanglab/singlecell_preprocessing

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singlecell_preprocessing

Single-cell preprocessing pipelines, including:

  • 10X Genomics Cellranger 10X data preprocessing work flow starting from raw bcl files, make fastqs and then to generate quantified matrix, including:

  • Quantify transcript expression in paired-end scRNA-seq data with kallisto bustools

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Single-cell preprocessing pipelines, such as converting raw bcl files, make fastqs and then generating quantified matrix, etc

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