The Zhang Lab
Pinned
Repositories
- Zhang_lab_manual Public
The Zhang Lab Manual: Lab principles and activities, Handbook for reproducible computational research, Learning resources, Expectations and achievements, etc
- wall-of-software Public Forked from CU-DBMI/wall-of-software
A list of tools, packages, workflows, resources, and other software developed at or in collaboration with DBMI
- singlecell_functions Public
We implemented and generalized single-cell functions and targeted analytical code for single-cell omics data analysis.
- singlecell_preprocessing Public
Single-cell preprocessing pipelines, such as converting raw bcl files, make fastqs and then generating quantified matrix, etc
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- rvd2_variational_bayesian Public
Code for our novel Variational Bayesian method for Zhang, Flaherty, BMC Bioinformatics, 2017. This is a Python-based tool for sensitive rare variant detection for NGS data.
- amp_phase1_ra Public
Code for Zhang, Wei, Slowikowski, Fonseka, Rao, et al, Nature Immunology, 2019. Single-cell transcriptomics and proteomics data analysis and integration for rheumatoid arthritis synovial tissue. These integrative strategies can be generalized to any other diseases.
- inflamedtissue_covid19_reference Public
Code for Zhang, et al, Genome Medicine, 2021. Cross-disease tissue data integration on single-cell transcriptomics
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