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README.md

exonsInAGene.py gtf file a gore genlerin icindeki exonlari bulmak icin yazildi. Sonrasinda gtfToBed calistirilirsa coordinate leri cekebiliyoruz.
gtfToBed.py exonlari verilen bir gene in coordinates lerini bulmak icin yazildi. Gene name e gore siralandi.
gtGeneMapping.py belirli coordinate lerdeki genotype datalarinin hangi gene lere ait oldugunu bulmak icin yazildi.
Login your remote server without password: >> sudo apt-get install sshpass; alias name_of_command_shortcut='sshpass -p ssh username@remote_host'
Change command name: >> nano ~/.bashrc; alias my_command='original command'; source ~/.bashrc
Reach a tool from anywhere in terminal: >> nano ~/.bashrc; export PATH=$PATH:/path/; source ~/.bashrc
Install bedtools: >> sudo apt install bedtools
Download specific data NCBI: https://pypi.org/project/ncbi-genome-download/

Name		Name	Last commit message	Last commit date
Latest commit History 108 Commits
README.md		README.md
correct_assignment_names.sh		correct_assignment_names.sh
correct_vcf.py		correct_vcf.py
count_gene.py		count_gene.py
create_simulated_datasets.sh		create_simulated_datasets.sh
divide_big_data_file_into_parts_for_given_char_list.py		divide_big_data_file_into_parts_for_given_char_list.py
estimateSampleComposition.py		estimateSampleComposition.py
estimateSampleComposition_sl_st.py		estimateSampleComposition_sl_st.py
find_line_idx_for_each_uppercase.py		find_line_idx_for_each_uppercase.py
get_fasta_sequences_with_given_word_in_header.py		get_fasta_sequences_with_given_word_in_header.py
get_no_core_gene_vcf.py		get_no_core_gene_vcf.py
gtGeneMapping.py		gtGeneMapping.py
gtfpos.py		gtfpos.py
hierarchical_clustering_plot.py		hierarchical_clustering_plot.py
my_dict.py		my_dict.py
no_core_gene_experiment.py		no_core_gene_experiment.py
result_graphics.py		result_graphics.py
result_graphics_accuracy.py		result_graphics_accuracy.py
result_graphics_mapped.py		result_graphics_mapped.py
result_graphics_real_data.py		result_graphics_real_data.py
result_mixed_graphics.py		result_mixed_graphics.py
runTerminalCodeFromJava.java		runTerminalCodeFromJava.java
single_agalactiae_graphics.py		single_agalactiae_graphics.py
single_baumannii_graphics.py		single_baumannii_graphics.py