viralrecall.py:400: DeprecationWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version.

[Achuan-2]

When I use -db "marker" -c

 bacphagenetwork@watson:/mnt/raid7/Dachuang/Achuan/viralrecall$ python viralrecall.py -i examples/arm29B.fna -p test_outdir -t 2 -db "marker" -c
viralrecall.py:400: DeprecationWarning: The default dtype for empty Series will be 'object' instead of 'float64' in a future version. Specify a dtype explicitly to silence this warning.
  s1 = pandas.DataFrame(pandas.Series(i, name = names[index]))

[faylward]

Thanks I can look into this. What version of python are you using?

[Achuan-2]

Python 3.7.12

[Achuan-2]

and all the score is 0

[faylward]

You can't calculate the score with the -db marker option. That is only for very quick prediction of the NCLDV marker genes (not a full database search).

…

On Thu, Dec 9, 2021, 10:53 PM Achuan ***@***.***> wrote: and all the score is 0 — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#12 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACPFN7VPF5VIHLOMDQMQD2LUQF2UNANCNFSM5JQ47LUA> . Triage notifications on the go with GitHub Mobile for iOS <https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675> or Android <https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub>.

[Achuan-2]

ok！Thanks！