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The ReproGenomics Viewer (RGV) is a cross-species genomic toolbox for the reproductive community. The system is based on the implementation of a JBrowse genome browser and a Galaxy bioinformatics workflow environment. It was developed to provide a one-stop genomic working environment and aims to assist scientists in the analysis and the mining o…

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fchalmel/RGV

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Status

In development

Installation

Download the code, then

python setup.py develop

Configuration

Copy development.ini.template to development.ini then fill app:main section parameters

admin contains the list of site administrators (emails, comma separated)

Run

Development

pserve development.ini

Production

pserve production.ini

Commands

##Database gestion

To reset database :

mongo 'databasename' --eval "db.'db'.drop()"

To reset ElasticSearch indexes:

curl -XDELETE localhost:9200/toxsign

About

The ReproGenomics Viewer (RGV) is a cross-species genomic toolbox for the reproductive community. The system is based on the implementation of a JBrowse genome browser and a Galaxy bioinformatics workflow environment. It was developed to provide a one-stop genomic working environment and aims to assist scientists in the analysis and the mining o…

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