flowshiny

Introduction

This Docker container provides a shiny web application that implements and displays most of the functionality of the R/Bioconductor package flowcatchR. It is based on the rocker/shiny Docker image.

Installation

This app needs a recent version of Docker:

• Docker installation instructions
• type docker pull federicomarini/flowshiny
• ... or alternatively clone this repository (git clone https://github.com/federicomarini/flowshiny.git) and build the image locally with cd flowshiny && docker build -t flowshiny .

Usage

• docker run -p 3838:3838 federicomarini/flowshiny
• If all goes well
  • On Linux, browse to http://localhost:3838/shinyFlow for the shiny web application illustrating the usage of the flowcatchR package
  • On MacOS or Windows running Docker Toolbox find the Docker host URL with docker-machine ip default|[name of the virtual machine] and browse to http://[thatIPaddress]:3838/shinyFlow

Other components of the dockerflow workflow solution

• flowstudio - https://github.com/federicomarini/flowstudio
• flowjupy - https://github.com/federicomarini/flowjupy
• dockerflow - https://github.com/federicomarini/dockerflow

Contact

For additional details regarding the functions of flowcatchR, please consult the package documentation, the package vignette or write an email to marinif@uni-mainz.de.

Bug reports/Issues/New features

Please use https://github.com/federicomarini/flowcatchR/issues for reporting bugs, issues or for suggesting new features to be implemented.