preparing_config

Configuration files

Use tritimap init generate configuration files required for running the main program.

conda activate tritimap
cd /your/work/path
tritimap init

Three configuration files will be generated in the working directory after the command is run successfully.

• config.yaml: Triti-Map main program operating parameters.
• sample.csv: Raw analysis data sample information.
• region.csv: Sequence assembly filter interval file. (Required only when using Assembly Module alone)