lichen_RADseq

Scripts from publication:
Grewe, F., Huang, J.-P., Leavitt, S. D., & Lumbsch, H. T. (2017). Reference-based RADseq resolves robust relationships among closely related species of lichen-forming fungi using metagenomic DNA. Scientific Reports, 7(1), 9884 (http://rdcu.be/v7iU)

RADseq simulation

radsim_pipe.R

mapping to reference sequence

mapping_clust.sh

linear regression model

lm_fragments_loci.R

plot of shared loci

matrix_plot.R

DAPC

pca.r