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You are missing 2 substitution parameters in the call above. Nevertheless, an error should be returned instead of a segfault. Should be a very easy fix.
We might want to change how args are passed here. I think maybe they should be separated, say: -m for the background model, then -m2 for the model beginning at node 2, etc. But I'll fix this as it is now setup first.
./pxseqgen -t your_tree.tre -o outfile.txt -m .33,.33,.33,.33,.33,2,.3,.3,.2,.5,.4
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