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Doesn't make an "empirical_frequencies" key when doing AA for phyml #62

Merged
merged 1 commit into from
Oct 31, 2013
Merged

Doesn't make an "empirical_frequencies" key when doing AA for phyml #62

merged 1 commit into from
Oct 31, 2013

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@cmccoy cmccoy commented Oct 31, 2013 

mus taxtastic/testfiles ‹master› » cat phyml_aa_stats.txt.json
{
  "datatype": "AA", 
  "subs_model": "LG", 
  "program": "PhyML v3.0_export", 
  "ras_model": "gamma", 
  "gamma": {
    "alpha": 0.626, 
    "n_cats": 4
  }
}

This makes pplacer choke.

matsen added a commit that referenced this pull request Oct 31, 2013
@matsen
Merge pull request #62 from fhcrc/62-phyml-aa-empirical-freq
c2f4f7f 
Doesn't make an "empirical_frequencies" key when doing AA for phyml
@matsen matsen merged commit c2f4f7f into dev Oct 31, 2013
cmccoy pushed a commit that referenced this pull request Oct 31, 2013
Merge tag 'v0.5.1'
355065b 
 * Fix GH-62: "empirical_frequencies" was not set when parsing PhyML AA statistics files.
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@cmccoy @matsen @nhoffman