commit a051e0e
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Fri Sep 23 13:55:14 2016 -0700

    added some function comments

commit 2b38851
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Fri Sep 23 12:55:25 2016 -0700

    created species_is_classified function

commit 5f03f38
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Fri Sep 23 12:54:56 2016 -0700

    making this less loud

commit badac7a
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Wed Sep 21 16:29:02 2016 -0700

    Removed --append-lineage.  Rest of script is MUCH faster using Pandas.

commit b2b9338
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Wed Sep 21 16:27:31 2016 -0700

    ranks indexed from lowest to highest in database table for sorting later

commit 7fdc05d
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Wed Sep 21 16:26:22 2016 -0700

    --from-taxid and --from-taxtable are now --from-id and --from-table

commit 7ba03ec
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Fri Sep 16 16:24:46 2016 -0700

    moved to subcommand taxtable

commit 8be153d
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Fri Sep 16 16:07:13 2016 -0700

    refreshing unittests, data was stale and incomplete

commit abdc319
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Fri Sep 16 14:44:52 2016 -0700

    taxid not valid as of 2014 http://www.ncbi.nlm.nih.gov/taxonomy/?term=477972

commit 7ee2f4d
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Wed Sep 14 14:55:48 2016 -0700

    moving a couple log messages

commit d9819d2
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Wed Sep 14 14:42:36 2016 -0700

    without pruning

commit 0834539
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Wed Sep 14 14:41:08 2016 -0700

    faster way to build ncbi taxonomy.  Includes initial taxonomic pruning.

commit 7d84d67
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Wed Sep 14 14:40:08 2016 -0700

    adding database schema back and removing building of full taxtable

commit 19d4c91
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Fri Sep 2 17:19:28 2016 -0700

    building full taxtable with Pandas and inserting into database

commit 0cb37bd
Author: Chris Rosenthal <crosenth@uw.edu>
Date:   Fri Sep 2 17:19:05 2016 -0700

    clobber ncbi database as well if --clobber

…er with lowest rank having the sql index of 0

…s input

… the case in ncbi releases in the fungal kingdom

… nodes that depend on other new nodes