add poetry support

.github/workflows/release.yml

@@ -18,15 +18,18 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v2
-    - uses: actions/setup-python@v2
+    - name: Install poetry
+      run: pipx install poetry
+    - uses: actions/setup-python@v4
+      with:
+        python-version: '3.9'
+        cache: 'poetry'
     - name: Install dependencies
-      run: |
-        python -m pip install --upgrade pip
-        python -m pip install setuptools wheel twine build
+      run: poetry install
     - name: Build and publish
       env:
-        TWINE_USERNAME: __token__
-        TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }}
+        PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }}
       run: |
-        python -m build
-        python -m twine upload --repository pypi dist/*
+        poetry config pypi-token.pypi "$PYPI_TOKEN"
+        poetry build
+        poetry publish

.github/workflows/run_tests.yml

@@ -17,14 +17,17 @@ jobs:
         platform: [ubuntu-latest, macos-latest, windows-latest]
     steps:
     - uses: actions/checkout@v1
+    - name: Install poetry
+      run: pipx install poetry
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v4
       with:
         python-version: ${{ matrix.python-version }}
+        cache: 'poetry'
     - name: Install dependencies
       run: |
-        python -m pip install --upgrade pip
-        pip install tox-gh-actions
-        pip install tox
+        poetry add -D tox-gh-actions=^2.0.0
+        poetry install
     - name: Test with tox
-      run: tox
+      run: poetry run tox
+

pyproject.toml

@@ -1,9 +1,65 @@
-[build-system]
-requires = [
-    "setuptools>=42",
-    "wheel"
+[tool.poetry]
+name = "tidy3d-beta"
+version = "1.8.1"
+description = ""
+authors = ["Tyler Hughes <tyler@flexcompute.com>"]
+readme = "README.md"
+packages = [
+    { include = "tidy3d" },
+    { include = "tidy3d/web" },
+    { include = "tidy3d/plugins" },
 ]
-build-backend = "setuptools.build_meta"
+
+
+[tool.poetry.dependencies]
+python = "^3.7.2"
+shapely = [{ python = "<3.10", version = "1.8.0" },
+    { python = "^3.10",version = "^1.8.1"}]
+scipy = [{ python = "~3.7", version = "^1.6.0" },
+    { python = "~3.8", version = "^1.8.0" },
+    { python = "^3.9", version = "^1.9.0" }]
+numpy = [{ python = "~3.7", version = "^1.19.0" },
+    { python = "~3.8", version = "^1.20.0" },
+    { python = "^3.9", version = "^1.23.0" }]
+matplotlib = [{ python = "~3.7", version = "~3.5" },
+    { python = "^3.8", version = "^3.6" }]
+pandas = [{ python = "~3.7", version = "^1.3.0"}, {python = "^3.8", version = "^1.5.0"}]
+xarray = "0.20.2"
+pyroots = "^0.5.0"
+importlib-metadata = "<5.0.0"
+h5netcdf = "^1.1.0"
+h5py = "^3.7.0"
+rich = "^12.6.0"
+pydantic = "^1.10.2"
+pyyaml = "^6.0"
+dask = "~2022.02.0"
+boto3 = "^1.26.31"
+requests = "^2.28.1"
+pyjwt = "^2.6.0"
+toml = "^0.10.2"
+click = "^8.1.3"
+
+[tool.poetry.group.dev.dependencies]
+black = "^22.12.0"
+pylint = "^2.15.8"
+pytest = "^7.2.0"
+pytest-timeout = "^2.1.0"
+gdspy = "^1.6.12"
+memory-profiler = "^0.61.0"
+dill = "^0.3.6"
+tox = "^3.0.0"
+
+[build-system]
+requires = ["poetry-core"]
+build-backend = "poetry.core.masonry.api"
+
 
 [tool.black]
 line-length = 100
+
+
+[tool.pytest.ini_options]
+filterwarnings = 'ignore::DeprecationWarning'
+
+[tool.poetry.scripts]
+tidy3d = "tidy3d.web.cli:tidy3d_cli"

tidy3d/web/cli/app.py

@@ -38,6 +38,12 @@ def configure(apikey):
     apikey : str
         User input api key.
     """
+    if not os.path.exists(TIDY3D_DIR):
+        os.mkdir(TIDY3D_DIR)
+    with open(CONFIG_FILE, "w+", encoding="utf-8") as config_file:
+        toml_config = toml.loads(config_file.read())
+        toml_config.update({"apikey": apikey})
+        config_file.write(toml.dumps(toml_config))
 
     def auth(req):
         """Enrich auth information to request.
@@ -66,4 +72,4 @@ def auth(req):
         click.echo("API key is invalid.")
 
 
-tidy3d_cli.add_command(configure)
+tidy3d_cli.add_command(configure)

tox.ini

@@ -15,46 +15,42 @@ python =
     3.11: python3.11
 
 [testenv]
-setenv = 
-    MPLBACKEND=agg
-deps =
-    -rrequirements/dev.txt
-commands = 
-    pip install requests
+whitelist_externals = poetry
+commands =
     black --check --diff . --line-length 100
-    python lint.py
+    poetry run python lint.py
 
-    pytest -rA tests/test_components/test_apodization.py
-    pytest -rA tests/test_components/test_base.py
-    pytest -rA tests/test_components/test_boundaries.py
-    pytest -rA tests/test_components/test_custom.py
-    pytest -rA tests/test_components/test_geometry.py
-    pytest -rA tests/test_components/test_grid.py
-    pytest -rA tests/test_components/test_grid_spec.py
-    pytest -rA tests/test_components/test_IO.py
-    pytest -rA tests/test_components/test_medium.py
-    pytest -rA tests/test_components/test_meshgenerate.py
-    pytest -rA tests/test_components/test_mode.py
-    pytest -rA tests/test_components/test_monitor.py
-    pytest -rA tests/test_components/test_field_projection.py
-    pytest -rA tests/test_components/test_sidewall.py
-    pytest -rA tests/test_components/test_simulation.py
-    pytest -rA tests/test_components/test_source.py
-    pytest -rA tests/test_components/test_types.py
-    pytest -rA tests/test_components/test_viz.py
-    pytest -rA tests/test_data/test_data_arrays.py
-    pytest -rA tests/test_data/test_monitor_data.py
-    pytest -rA tests/test_data/test_sim_data.py
-    pytest -rA tests/test_package/test_config.py
-    pytest -rA tests/test_package/test_log.py
-    pytest -rA tests/test_package/test_main.py
-    pytest -rA tests/test_package/test_make_script.py
-    pytest -rA tests/test_package/test_material_library.py
-    pytest -rA tests/test_plugins/test_component_modeler.py
-    pytest -rA tests/test_plugins/test_mode_solver.py
-    pytest -rA tests/test_plugins/test_dispersion_fitter.py
-    pytest -rA tests/test_plugins/test_resonance_finder.py
-    pytest -rA tests/test_web/test_auth.py
-    pytest -rA tests/test_web/test_task.py
-    pytest -rA tests/test_web/test_webapi.py
-    pytest -rA tests/test_web/test_cli.py
+    poetry run pytest -rA tests/test_components/test_base.py
+    poetry run pytest -rA tests/test_components/test_apodization.py
+    poetry run pytest -rA tests/test_components/test_boundaries.py
+    poetry run pytest -rA tests/test_components/test_custom.py
+    poetry run pytest -rA tests/test_components/test_geometry.py
+    poetry run pytest -rA tests/test_components/test_grid.py
+    poetry run pytest -rA tests/test_components/test_grid_spec.py
+    poetry run pytest -rA tests/test_components/test_IO.py
+    poetry run pytest -rA tests/test_components/test_medium.py
+    poetry run pytest -rA tests/test_components/test_meshgenerate.py
+    poetry run pytest -rA tests/test_components/test_mode.py
+    poetry run pytest -rA tests/test_components/test_monitor.py
+    poetry run pytest -rA tests/test_components/test_field_projection.py
+    poetry run pytest -rA tests/test_components/test_sidewall.py
+    poetry run pytest -rA tests/test_components/test_simulation.py
+    poetry run pytest -rA tests/test_components/test_source.py
+    poetry run pytest -rA tests/test_components/test_types.py
+    poetry run pytest -rA tests/test_components/test_viz.py
+    poetry run pytest -rA tests/test_data/test_data_arrays.py
+    poetry run pytest -rA tests/test_data/test_monitor_data.py
+    poetry run pytest -rA tests/test_data/test_sim_data.py
+    poetry run pytest -rA tests/test_package/test_config.py
+    poetry run pytest -rA tests/test_package/test_log.py
+    poetry run pytest -rA tests/test_package/test_main.py
+    poetry run pytest -rA tests/test_package/test_make_script.py
+    poetry run pytest -rA tests/test_package/test_material_library.py
+    poetry run pytest -rA tests/test_plugins/test_component_modeler.py
+    poetry run pytest -rA tests/test_plugins/test_mode_solver.py
+    poetry run pytest -rA tests/test_plugins/test_dispersion_fitter.py
+    poetry run pytest -rA tests/test_plugins/test_resonance_finder.py
+    poetry run pytest -rA tests/test_web/test_auth.py
+    poetry run pytest -rA tests/test_web/test_task.py
+    poetry run pytest -rA tests/test_web/test_webapi.py
+    poetry run pytest -rA tests/test_web/test_cli.py