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Doxyfile was added by #174. It's not the one that was used to generate the original documentation, but we could keep updating the new Doxyfile if needed.
There are doxygen style comments in the header files.
Could you add a Doxyfile, for example the one that was used to produce
http://gamma.cs.unc.edu/FCL/fcl_docs/webpage/generated/annotated.html
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