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Fix issues #116 #117

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merged 5 commits into from
Feb 8, 2024
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This PR is a quick patch release, thus pointed directly to master, to solve issue #116 where integron_finder would sometimes generate genbank files where items start in position 0.

However, position 0 is not allowed by the perl gbk2gff converter and thus, a small sed operation was added to modify these values to 1, when happening, before the conversion.

Code was tested by reporter user and thus, it can be merged when all small checkings are done.

@fmalmeida fmalmeida added bug Something isn't working fixed labels Feb 8, 2024
@fmalmeida fmalmeida self-assigned this Feb 8, 2024
@fmalmeida fmalmeida merged commit 16a47fc into master Feb 8, 2024
@fmalmeida fmalmeida deleted the 116-integron_finder_2gff-terminated-with-an-error branch February 8, 2024 16:35
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BACANNOT:INTEGRON_FINDER_2GFF (vibrio9)` terminated with an error exit status (255)
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