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@fmfi-compbio

Computational Biology Research Group at Comenius University in Bratislava

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  1. deepnano-blitz deepnano-blitz Public

    Very fast ONT basecaller

    Rust 52 12

  2. osprey osprey Public

    Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.

    C++ 15 1

  3. admm-pruning admm-pruning Public

    Python 15

  4. coral-basecaller coral-basecaller Public

    Python 13 1

  5. warpstr warpstr Public

    Determining tandem repeat lengths using raw nanopore signals.

    Python 11 1

  6. heron heron Public

    HAC nanopore basecaller

    Python 6 1

Repositories

Showing 10 of 38 repositories
  • admm-pruning Public
    fmfi-compbio/admm-pruning’s past year of commit activity
    Python 15 MIT 0 2 0 Updated Jul 22, 2024
  • assembly-scripts Public

    A selection of scripts useful for genome assembly.

    fmfi-compbio/assembly-scripts’s past year of commit activity
    Perl 0 MIT 0 0 0 Updated Jul 7, 2024
  • mcdp2 Public

    Tool for colocalization analysis for genomic annotations with genomic contexts

    fmfi-compbio/mcdp2’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jun 17, 2024
  • canParSR23 Public

    Assembly of yeast Candida parapsilosis strain SR23

    fmfi-compbio/canParSR23’s past year of commit activity
    Gnuplot 0 0 0 0 Updated May 18, 2024
  • pridav_tutorials Public
    fmfi-compbio/pridav_tutorials’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Dec 1, 2023
  • neural-network-merging Public
    fmfi-compbio/neural-network-merging’s past year of commit activity
    Jupyter Notebook 6 2 0 1 Updated Sep 20, 2023
  • warpstr Public

    Determining tandem repeat lengths using raw nanopore signals.

    fmfi-compbio/warpstr’s past year of commit activity
    Python 11 1 4 0 Updated Sep 11, 2023
  • plasgraph2-datasets Public

    Datasets for training and testing plasgraph2

    fmfi-compbio/plasgraph2-datasets’s past year of commit activity
    0 0 0 0 Updated Aug 30, 2023
  • nadavca Public Forked from baklazan/nadavca

    NAnopore DAta Variant CAller

    fmfi-compbio/nadavca’s past year of commit activity
    Python 1 1 0 0 Updated Jun 27, 2023
  • virpool Public

    Tool for Model-Based Estimation of SARS-CoV-2 Variant Proportions in Wastewater Samples

    fmfi-compbio/virpool’s past year of commit activity
    Python 4 0 0 0 Updated Jun 19, 2023
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