Use Jupyter environment to look at protein length for various organisms. Served via Binder system.
In response to a suggested query here.
Click the launch binder badge anywhere on this page to launch the active Jupyter environment.
The sources for protein length data:
- Saccharomyces cerevisiae S288C (yeast) - At the time of running the code it is interactively collected from YeastMine using Intermine's webservice to retrieve length of all proteins, which is based on this template.
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Arabidopsis thaliana (thale cress) - the repo includes a file obtained June 2018 from Genome Annotation at TAIR. Specifically, if you follow the link for the TAIR ftp site from the text under 'Data availability', it leads to page that features TAIR9_sequences among the list that you can click on to get to a page where you can download TAIR9_pep_20090619.
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Drosophila melanogaster (fruit fly) - the repo includes a file obtained June 2018 from Proteomes - Drosophila melanogaster (Fruit fly) by clicking on the 'Download' tab under
Componentsin middle of the page.